Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H03
         (1034 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    25   0.72 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.95 

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +3

Query: 747 PPPPXXXXPNKXXXPPPPKXXGGXPPPRXPXKKIXNXXPPP 869
           PP      P+    PPP +      P   P  K  N   PP
Sbjct: 202 PPTEDCDVPSTIPPPPPEEDDDSNIPQNNPKNKQHNFNLPP 242


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 822 PPRXPXKKIXNXXPPPXXXXPXGAPPXFPP 911
           P   P   + N  PP     P   PP FPP
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 907 PPXXXXPXKXXPPFFPP 957
           PP    P    PP FPP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,819
Number of Sequences: 336
Number of extensions: 3593
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29485742
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)