Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H03
         (1034 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.84 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.84
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +1

Query: 811 GXXPPPGXLXKKXKTXXPP-PXXXXPXGXPPXSPP 912
           G  P P    +  +   PP P    P G PP +PP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
 Frame = +3

Query: 792 PPPKXXGGXPPPRXPXKKIXNXXPP-PXXXXPXGAPPXFPP 911
           P     G  P P    +      PP P    P G PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +3

Query: 747 PPPPXXXXPNKXXXPPPPKXXGGXPPPRXP 836
           P  P    P      PPP    G PP + P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 731 PKKXPPPPP 757
           PK  PPPPP
Sbjct: 339 PKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,871
Number of Sequences: 438
Number of extensions: 8716
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34588554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)