Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H01
         (868 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    67   1e-13
AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    67   2e-13
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    67   2e-13
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    64   1e-12

>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 61  IQKESTLHLVLRLRGGMQIFV 81



 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157



 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233



 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309



 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 365 IQKESTLHLVLRLRGGMQIFV 385



 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 517 IQKESTLHLVLRLRGGMQIFV 537



 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 593 IQKESTLHLVLRLRGGMQIFV 613



 Score = 66.9 bits (156), Expect = 2e-13
 Identities = 31/62 (50%), Positives = 39/62 (62%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 374 VQ 379
           +Q
Sbjct: 669 IQ 670



 Score = 64.9 bits (151), Expect = 8e-13
 Identities = 32/81 (39%), Positives = 44/81 (54%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQR IF+GKQ+ D +T  DY 
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 441 IQKESTLHLVLRLRGGMQIFV 461



 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 354 RQLKITKFRXGSVLHLVLALRGGE 425
           R L     +  S LHLVL LRGG+
Sbjct: 662 RTLSDYNIQKESTLHLVLRLRGGQ 685


>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 66.9 bits (156), Expect = 2e-13
 Identities = 31/62 (50%), Positives = 39/62 (62%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 374 VQ 379
           +Q
Sbjct: 61  IQ 62



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 354 RQLKITKFRXGSVLHLVLALRGG 422
           R L     +  S LHLVL LRGG
Sbjct: 54  RTLSDYNIQKESTLHLVLRLRGG 76


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 66.9 bits (156), Expect = 2e-13
 Identities = 31/62 (50%), Positives = 39/62 (62%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 374 VQ 379
           +Q
Sbjct: 61  IQ 62


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 64.5 bits (150), Expect = 1e-12
 Identities = 30/62 (48%), Positives = 38/62 (61%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQR IF+GKQ+ D +T  DY 
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108

Query: 374 VQ 379
           +Q
Sbjct: 109 IQ 110



 Score = 46.0 bits (104), Expect = 4e-07
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +2

Query: 296 GIPPQQQRLIFSGKQMNDEKTAQDYKVQGRFSTSSCFGFKGRRMIWL 436
           GIPP QQRLIF+GKQ+ D +T  DY +Q   +       +G   I++
Sbjct: 7   GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFV 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,337
Number of Sequences: 336
Number of extensions: 2159
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)