Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H01
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 78 1e-15
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 64 2e-11
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 64 3e-11
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 64 3e-11
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 64 3e-11
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 64 3e-11
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 32 0.092
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 31 0.21
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 28 2.0
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
MLIKVKTLTGKEIE+DI+P D GIPP QQRLI++GKQM D+K A+ Y
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 374 VQG 382
++G
Sbjct: 61 LEG 63
Score = 29.5 bits (63), Expect = 0.65
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 384 GSVLHLVLALRGG 422
GSVLHLVLALRGG
Sbjct: 64 GSVLHLVLALRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 374 VQ 379
+Q
Sbjct: 365 IQ 366
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 32.3 bits (70), Expect = 0.092
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 221 GKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDE 352
GK+ +++IEP + +PP++Q++I G Q+ D+
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDD 53
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +2
Query: 299 IPPQQQRLIFSGKQMNDEKTAQDYKVQ 379
I ++QRLI++G+ + DE++ + YK+Q
Sbjct: 39 IEKERQRLIYAGRVLKDEESLKTYKIQ 65
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +2
Query: 308 QQQRLIFSGKQMNDEKTAQDYKVQ 379
++Q+LI+SG+ + D+KT +Y ++
Sbjct: 40 ERQKLIYSGRILADDKTVGEYNIK 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,689
Number of Sequences: 5004
Number of extensions: 36528
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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