Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H01
(868 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 67 2e-11
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 67 2e-11
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 67 2e-11
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 43 3e-04
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 34 0.13
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 34 0.17
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 34 0.17
SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 29 4.9
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 365 IQKESTLHLVLRLRGGMQIFV 385
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 441 IQKESTLHLVLRLRGGMQIFV 461
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 374 VQ 379
+Q
Sbjct: 517 IQ 518
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 374 VQ 379
+Q
Sbjct: 365 IQ 366
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 374 VQ 379
+Q
Sbjct: 139 IQ 140
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++EP+D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
Score = 35.9 bits (79), Expect = 0.043
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VK K +D+E +D GIPP+ QRL++ +++ D ++ DY
Sbjct: 77 MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135
Query: 374 VQ 379
++
Sbjct: 136 IK 137
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 43.2 bits (97), Expect = 3e-04
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 299 IPPQQQRLIFSGKQMNDEKTAQDYKVQ 379
IPP QQRLIF+GKQ+ D +T DY +Q
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQ 28
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 200 IKVKTLTGKEIEIDIE-PTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKT 358
I V TLTG+ I I + P G P QQRL+F+G+ ++DE T
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDT 126
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 33.9 bits (74), Expect = 0.17
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 296 GIPPQQQRLIFSGKQMNDEKTAQDY 370
GIP ++QRLIF GK + DEK +++
Sbjct: 21 GIPAERQRLIFKGKVLQDEKKLKEF 45
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 33.9 bits (74), Expect = 0.17
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 296 GIPPQQQRLIFSGKQMNDEKTAQDY 370
GIP ++QRLIF GK + DEK +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEF 25
>SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 616 MSWDXPQLECSEKNAXLV 669
M WD QLEC +KNA LV
Sbjct: 1 MVWDLAQLECKKKNATLV 18
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +2
Query: 176 NYNSFKMLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXG---IPPQQQRLIFSGKQMN 346
N S M+I KTL + +++I + G P +LI++GK +N
Sbjct: 61 NIKSVNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILN 120
Query: 347 DEKTAQDYKV 376
D+ ++Y +
Sbjct: 121 DDNPLKEYNI 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,640,783
Number of Sequences: 59808
Number of extensions: 249337
Number of successful extensions: 536
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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