Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H01
         (868 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.     67   6e-13

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score = 67.3 bits (157), Expect = 6e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 61  IQKESTLHLVLRLRGGMQIFV 81



 Score = 67.3 bits (157), Expect = 6e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
           +Q   +       +G   I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157



 Score = 66.9 bits (156), Expect = 7e-13
 Identities = 31/62 (50%), Positives = 39/62 (62%)
 Frame = +2

Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
           M I VKTLTGK I +++EP+D             GIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 374 VQ 379
           +Q
Sbjct: 213 IQ 214



 Score = 23.8 bits (49), Expect = 6.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 354 RQLKITKFRXGSVLHLVLALRGG 422
           R L     +  S LHLVL LRGG
Sbjct: 206 RTLSDYNIQKESTLHLVLRLRGG 228


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,929
Number of Sequences: 2352
Number of extensions: 8122
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 92613024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)