Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H01
(868 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 89 5e-18
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 64 1e-10
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 64 1e-10
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 64 1e-10
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 64 2e-10
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 64 2e-10
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 48 9e-06
AF074395-1|AAC26791.1| 365|Caenorhabditis elegans CET-1 protein. 31 1.1
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 29 4.3
U64856-2|AAB04986.2| 365|Caenorhabditis elegans Dpp/bmp-like pr... 29 5.7
AF004395-1|AAC27729.1| 365|Caenorhabditis elegans decapentapleg... 29 5.7
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 28 7.5
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 28 7.5
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 88.6 bits (210), Expect = 5e-18
Identities = 43/63 (68%), Positives = 46/63 (73%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
MLIKVKTLTGKEIE+DIEP D GIPP QQRLIF+GKQMND+KTA DYK
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYK 60
Query: 374 VQG 382
V G
Sbjct: 61 VLG 63
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 372 KFRXGSVLHLVLALRGG 422
K GSVLHLVLALRGG
Sbjct: 60 KVLGGSVLHLVLALRGG 76
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 365 IQKESTLHLVLRLRGGMQIFV 385
Score = 61.7 bits (143), Expect = 7e-10
Identities = 31/81 (38%), Positives = 43/81 (53%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTL GK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 441 IQKESTLHLVLRLRGGMQIFV 461
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/47 (48%), Positives = 28/47 (59%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSG 334
M I VKTLTGK I +++E +D GIPP QQRLIF+G
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 365 IQKESTLHLVLRLRGGMQIFV 385
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 517 IQKESTLHLVLRLRGGMQIFV 537
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 593 IQKESTLHLVLRLRGGMQIFV 613
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 669 IQKESTLHLVLRLRGGMQIFV 689
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 745 IQKESTLHLVLRLRGGMQIFV 765
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 374 VQ 379
+Q
Sbjct: 821 IQ 822
Score = 61.7 bits (143), Expect = 7e-10
Identities = 31/81 (38%), Positives = 43/81 (53%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTL GK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 441 IQKESTLHLVLRLRGGMQIFV 461
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 365 IQKESTLHLVLRLRGGMQIFV 385
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 441 IQKESTLHLVLRLRGGMQIFV 461
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 517 IQKESTLHLVLRLRGGMQIFV 537
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 593 IQKESTLHLVLRLRGGMQIFV 613
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 669 IQKESTLHLVLRLRGGMQIFV 689
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 745 IQKESTLHLVLRLRGGMQIFV 765
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 374 VQ 379
+Q
Sbjct: 821 IQ 822
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 48.0 bits (109), Expect = 9e-06
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +2
Query: 191 KMLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDY 370
K+ + VKTL GK I I I+ TD G+PP QQRLIF Q+ +++ Y
Sbjct: 160 KLTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAY 219
Query: 371 KVQ 379
++
Sbjct: 220 NIR 222
>AF074395-1|AAC26791.1| 365|Caenorhabditis elegans CET-1 protein.
Length = 365
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 238 RYRTHRQSGKNQRKSRRKGR-HSAAATASHIFRKTN 342
R + RQ+G ++RK+R+KGR H S++ R+T+
Sbjct: 233 RRKRSRQTGNSERKNRKKGRKHHNTEAESNLCRRTD 268
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIP 304
M I VKTLTGK I +++E +D GIP
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37
>U64856-2|AAB04986.2| 365|Caenorhabditis elegans Dpp/bmp-like
protein 1 protein.
Length = 365
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 238 RYRTHRQSGKNQRKSRRKGR-HSAAATASHIFRKTN 342
R + Q+G ++RK+R+KGR H S++ R+T+
Sbjct: 233 RRKRSAQTGNSERKNRKKGRKHHNTEAESNLCRRTD 268
>AF004395-1|AAC27729.1| 365|Caenorhabditis elegans decapentaplegic
protein homolog protein.
Length = 365
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 238 RYRTHRQSGKNQRKSRRKGR-HSAAATASHIFRKTN 342
R + Q+G ++RK+R+KGR H S++ R+T+
Sbjct: 233 RRKRSAQTGNSERKNRKKGRKHHNTEAESNLCRRTD 268
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 197 LIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQD 367
++ VKTL + + +++ + GIP ++QRL ++G+Q+ D D
Sbjct: 1 MVFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDSDCGID 56
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 197 LIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQD 367
++ VKTL + + +++ + GIP ++QRL ++G+Q+ D D
Sbjct: 1 MVFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDSDCGID 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,475,210
Number of Sequences: 27780
Number of extensions: 202931
Number of successful extensions: 577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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