Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H01
(868 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 83 3e-16
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 82 4e-16
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 64 2e-10
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 64 2e-10
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 64 2e-10
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 64 2e-10
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 64 2e-10
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 64 2e-10
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 64 2e-10
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 64 2e-10
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 64 2e-10
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 64 2e-10
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 64 2e-10
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 64 2e-10
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 64 2e-10
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 64 2e-10
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 64 2e-10
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 63 2e-10
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 63 2e-10
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 63 2e-10
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 63 2e-10
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 63 2e-10
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 59 3e-09
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 56 2e-08
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 56 4e-08
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 38 0.009
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 38 0.009
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 38 0.011
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 38 0.011
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 33 0.19
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 33 0.25
At5g16090.1 68418.m01880 ubiquitin family protein contains INTER... 33 0.33
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 33 0.33
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 33 0.33
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 33 0.33
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 32 0.57
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 31 1.00
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 30 1.7
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 29 4.0
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 28 9.3
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/62 (61%), Positives = 46/62 (74%)
Frame = +2
Query: 197 LIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYKV 376
+IKVKTLTGKEIEIDIEPTD GIPP QQRLI++GKQ+ D+KTA+DY +
Sbjct: 78 MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 137
Query: 377 QG 382
+G
Sbjct: 138 EG 139
Score = 64.9 bits (151), Expect = 7e-11
Identities = 33/79 (41%), Positives = 43/79 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMI 430
+Q + +G MI
Sbjct: 61 IQKESTLHLVLRLRGGTMI 79
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 384 GSVLHLVLALRGG 422
GSVLHLVLALRGG
Sbjct: 140 GSVLHLVLALRGG 152
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/62 (61%), Positives = 46/62 (74%)
Frame = +2
Query: 197 LIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYKV 376
+IKVKTLTGKEIEIDIEPTD GIPP QQRLI++GKQ+ D+KTA+DY +
Sbjct: 78 MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAI 137
Query: 377 QG 382
+G
Sbjct: 138 EG 139
Score = 64.9 bits (151), Expect = 7e-11
Identities = 33/79 (41%), Positives = 43/79 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMI 430
+Q + +G MI
Sbjct: 61 IQKESTLHLVLRLRGGTMI 79
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 384 GSVLHLVLALRGG 422
GSVLHLVLALRGG
Sbjct: 140 GSVLHLVLALRGG 152
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 63.7 bits (148), Expect = 2e-10
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D G+PP QQRLIF+GKQ++D +T DY
Sbjct: 79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYN 138
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 139 IQKESTLHLVLRLRGGMQIFV 159
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I V+TLT K I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 155 MQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
Query: 374 VQ 379
+Q
Sbjct: 215 IQ 216
Score = 53.6 bits (123), Expect = 2e-07
Identities = 28/62 (45%), Positives = 34/62 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I KTLT K I ID+ +D GIP QQRLIFSGK ++D +T DY
Sbjct: 3 MQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADYS 62
Query: 374 VQ 379
+Q
Sbjct: 63 IQ 64
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMND-EKTAQDY 370
M I V TLTGK I +++E +D I P QQRLIF+G+Q+ D T DY
Sbjct: 231 MQIFVNTLTGKTITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADY 290
Query: 371 KVQGRFSTSSCFGFKGRRMIWLVIIFLCIY 460
+Q + +G + +FL +
Sbjct: 291 NIQKESTLHLVLRLRGGECFGFIFLFLLCF 320
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 374 VQ 379
+Q
Sbjct: 365 IQ 366
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 374 VQ 379
+Q
Sbjct: 289 IQ 290
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 374 VQ 379
+Q
Sbjct: 289 IQ 290
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 365 IQKESTLHLVLRLRGGMQIFV 385
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 365 IQKESTLHLVLRLRGGMQIFV 385
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQ 379
+Q
Sbjct: 213 IQ 214
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 374 VQ 379
+Q
Sbjct: 289 IQ 290
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQ 379
+Q
Sbjct: 213 IQ 214
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 374 VQ 379
+Q
Sbjct: 289 IQ 290
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/81 (38%), Positives = 43/81 (53%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D IPP QQRLIF+GKQ+ D +T DY
Sbjct: 152 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLEDGRTLADYN 211
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 212 IQKESTLHLVLRLRGGMQIFV 232
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/58 (48%), Positives = 35/58 (60%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQD 367
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T D
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQM 343
M I VKTLTGK I +++E + GIPP QQRLIF+GKQ+
Sbjct: 228 MQIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 277
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/81 (38%), Positives = 43/81 (53%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I +KTLTGK +++E +D GIPP Q RLIF+GKQ+ D +T DY
Sbjct: 1 MQIFLKTLTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYN 60
Query: 374 VQGRFSTSSCFGFKGRRMIWL 436
VQ + F+G I++
Sbjct: 61 VQEDSTLHLLLRFRGGMQIFV 81
Score = 58.4 bits (135), Expect = 6e-09
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GI P QQRLIF+GKQ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHEDGRTLADYN 212
Query: 374 VQ 379
+Q
Sbjct: 213 IQ 214
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 374 VQ 379
+Q
Sbjct: 61 IQ 62
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M IKVKTLT K+I+I+IE TD GIPP QR++++GKQ+ D+ TA+ Y
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYN 60
Query: 374 VQ 379
++
Sbjct: 61 LE 62
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 384 GSVLHLVLALRGG 422
GSVLHLVLALRGG
Sbjct: 64 GSVLHLVLALRGG 76
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I V+TLTGK I ++++ +D GI P+QQRLIF+GKQ+ D +T DY
Sbjct: 79 MQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYN 138
Query: 374 VQ 379
+Q
Sbjct: 139 IQ 140
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/79 (36%), Positives = 39/79 (49%)
Frame = +2
Query: 200 IKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYKVQ 379
I KTLT K I +D+E +D GIP QQRLIF+GKQ+ D T DY +Q
Sbjct: 5 IYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYNIQ 64
Query: 380 GRFSTSSCFGFKGRRMIWL 436
+ +G I++
Sbjct: 65 KESTLHLVLRLRGGMQIFV 83
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I +KTLTGK I +++E +D GI P QQ LIF G+Q+ D T DY
Sbjct: 552 MQIFIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTLGDYD 611
Query: 374 VQGRFSTSSCFGFKGRR 424
+ + + + RR
Sbjct: 612 IHKKSTLYLVLRLRQRR 628
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQ--QRLIFSGKQMNDEKTAQD 367
M I VKTLT K I +++E D GI PQ QRLIF GK++ D T D
Sbjct: 319 MQIFVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKDGCTLAD 378
Query: 368 YKVQ 379
Y +Q
Sbjct: 379 YSIQ 382
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I VK GK I +++ +D G PP QQ L+F G Q+ D +T DY
Sbjct: 393 MQIFVKLFGGKIITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYN 452
Query: 374 VQ 379
++
Sbjct: 453 IR 454
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +2
Query: 209 KTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYKVQGRF 388
+T T K I +++E +D GIP +QRLIF G+ + +T DY +Q
Sbjct: 481 ETPTCKTITLEVESSDTIDNVKVKIQHKVGIPLDRQRLIFGGRVLVGSRTLLDYNIQKGS 540
Query: 389 STSSCFGFKGRRMIWL 436
+ F +G I++
Sbjct: 541 TIHQLFLQRGGMQIFI 556
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 212 TLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYKVQ 379
+ TG+ +++E +D IP RLIF+GK + +T Y +Q
Sbjct: 249 SFTGENFILEVESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPLEGGRTLAHYNIQ 304
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/62 (43%), Positives = 34/62 (54%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M I +KTLTG+ I +++E D GIP QQRLIF GKQ+ D T DY
Sbjct: 86 MFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYN 145
Query: 374 VQ 379
+Q
Sbjct: 146 IQ 147
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXG--IPPQQQRLIFSGKQMNDEKTAQD 367
M I VKTL+G EI+++P D G P +Q LI GK + DE T ++
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 368 YKV 376
V
Sbjct: 61 NNV 63
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGK 337
M+I +KTLTG+ +++ +D GIP +QQRLIF G+
Sbjct: 50 MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIPVEQQRLIFQGR 97
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 37.5 bits (83), Expect = 0.011
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXG---IPPQQQRLIFSGKQMNDEKTAQ 364
M I VKTL G EI+++P D G P +Q LI GK + DE T +
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 365 DYKV 376
+ KV
Sbjct: 61 ENKV 64
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 37.5 bits (83), Expect = 0.011
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXG---IPPQQQRLIFSGKQMNDEKTAQ 364
M I VKTL G EI+++P D G P +Q LI GK + DE T +
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 365 DYKV 376
+ KV
Sbjct: 61 ENKV 64
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTD---XXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQ 364
M + VKTL G EI + PTD P QQ LI +GK + DE T
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 365 DYKV 376
+ KV
Sbjct: 61 ENKV 64
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +2
Query: 200 IKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYKVQ 379
+ +KTL + + + G+P QQRLIF G+ + D+ +Y ++
Sbjct: 26 LNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYHLE 85
>At5g16090.1 68418.m01880 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 142
Score = 32.7 bits (71), Expect = 0.33
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXG---IPPQQQRLIFSGKQMNDEKTAQ 364
M I VKTL G EI+++P D G P QQ LI +++ DE T +
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 365 DYKV 376
KV
Sbjct: 61 ANKV 64
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 32.7 bits (71), Expect = 0.33
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXG---IPPQQQRLIFSGKQMNDEKTAQ 364
M + VKTL G EI + P+D G P QQ LI +GK + DE +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 365 DYKV 376
+ KV
Sbjct: 61 ENKV 64
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 32.7 bits (71), Expect = 0.33
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXG---IPPQQQRLIFSGKQMNDEKTAQ 364
M + VKTL G EI + P+D G P QQ LI +GK + DE +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 365 DYKV 376
+ KV
Sbjct: 61 ENKV 64
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 32.7 bits (71), Expect = 0.33
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXG---IPPQQQRLIFSGKQMNDEKTAQ 364
M + VKTL G EI + P+D G P QQ LI +GK + DE +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 365 DYKV 376
+ KV
Sbjct: 61 ENKV 64
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 173 NNYNSFKMLIKVKTLTG-KEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMND 349
N S ++ I V+ ++G K I I E D IP +QR+I+ GKQ+
Sbjct: 88 NRPESTRLQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQR 147
Query: 350 EKTAQDYKVQ 379
E + Y ++
Sbjct: 148 ENSLTYYSIE 157
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 197 LIKVKTLTGKEI-EIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEK 355
LI ++ T ++ IE T G+ P+QQRL+F GK+ D +
Sbjct: 69 LISIRVSTFAHFHDLSIEATSTFGELKMVLSLLTGLEPKQQRLVFKGKEREDHE 122
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 200 IKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQ-RLIFSGKQMNDEKTAQDYKV 376
IK+K L + +E T G+ P++Q RL+F G+ + +++ DY V
Sbjct: 13 IKIKILHSTTHTLSVERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQRLSDYHV 72
Query: 377 Q 379
+
Sbjct: 73 E 73
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 200 IKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEK 355
++V T++ EI I+ GI ++QRL+F GK+ D +
Sbjct: 81 LRVSTVSQLSYEISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKEREDRE 132
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +2
Query: 194 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 373
M + + T TG I I+ + GIP +Q L GK + D+ DY
Sbjct: 1 MNVDIDTETGSSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 374 V 376
+
Sbjct: 61 I 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,072
Number of Sequences: 28952
Number of extensions: 180480
Number of successful extensions: 528
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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