Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G24
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   2.1  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.7  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.7  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    27   3.6  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    27   4.8  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    26   6.3  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   6.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   6.3  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    26   8.4  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.4  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 375 WSARAVADTSTQWNTYSRQVSWPAPERS-PKVPLPGSHWTSGLSSPPVRNETL 530
           W+A+ + D S +WN++    S P+  R+ P   +    WT+G+    V  +T+
Sbjct: 38  WTAQKILDYSAEWNSHEYFPS-PSNWRALPFYTIILDKWTNGVPENDVAEDTV 89


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 465 VPLPGSHWT-SGLSSPPVRNETLTPPAASQVQP 560
           +P PGS  T S LSSP ++ ++ +PP +    P
Sbjct: 394 IPSPGSSTTCSNLSSPHIKRKSRSPPQSLPSTP 426


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +1

Query: 199 VFVKPRYSTSFKSVFRLECHQVIQHCQSDDR*MLSG*RDEGVQTERLGFSXTIPTRTTSG 378
           V +KP+   + K +  L   + I   + DD+  LS   D G+  E       +  + T G
Sbjct: 570 VILKPKVLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVG 629

Query: 379 AREQLQIHRPNGTRTPGRCRG 441
           A +   +H     + P  C+G
Sbjct: 630 ASQGGLVHTIWKEKGPEICKG 650


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 504 SPPVRNETLTPPAASQVQPTEEQLRVLSSLP 596
           SP   NE ++PP+A    P+ E+L+  +SLP
Sbjct: 264 SPATVNEHISPPSA-LTNPSTEELKPSTSLP 293


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +3

Query: 360 DEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPK 464
           DE++++S+    ++S+Q+++ S + S P+   +PK
Sbjct: 329 DEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPK 363


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 519 NETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKL 629
           NE     A S  QPTE+   +L S  +AV+ +  RK+
Sbjct: 137 NEKYLQSALSYTQPTEDSSSLLDSDANAVMMSWERKI 173


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = +3

Query: 417 TYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPT-----EEQLR- 578
           +Y     +P    +P      + W +   +    N   +PP  SQ+ PT     E+QLR 
Sbjct: 255 SYGANSQYPIIAATPLNSQTQASWVAQPENQAYANLIPSPPTTSQILPTELTEEEKQLRS 314

Query: 579 -VLSSLPDAVLYTLLRKLERI 638
            VL  L       L + LER+
Sbjct: 315 KVLFYLKQDSFIQLCQSLERV 335


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 498 LSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVL 608
           +++PPV N  LTPPA     P  E   V ++ P+A++
Sbjct: 230 VTTPPVNNTLLTPPA-----PPVELPPVTTTSPNAII 261


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 549 GWRQEVSGSHCAQEGCSDRKSSESP 475
           GWR  +  +HCA    +D  SS  P
Sbjct: 31  GWRISMEDAHCALLNFTDSNSSNPP 55


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 450 ERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTE 566
           E SP   LP     +G   PP + E   P  AS  +P+E
Sbjct: 429 EESPSTELP----ETGKEQPPNKAEPAVPTEASSTKPSE 463


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 444 APERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQL-RVLSSLP 596
           AP  +P  P P S      S+PP    ++ PP+ +   P   +   + SSLP
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPP--RPSIPPPSPASAPPIPSKAPPIPSSLP 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,105
Number of Sequences: 5004
Number of extensions: 66379
Number of successful extensions: 214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)