Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G24
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1012 + 23550314-23551504 33 0.31
08_01_0027 - 195321-195932,197206-197415 33 0.31
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340 32 0.54
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.54
09_02_0603 - 11150739-11150746,11150791-11151340 31 1.6
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 30 2.9
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 30 2.9
08_01_0039 + 284948-285301 30 2.9
07_03_1026 - 23369298-23370326 29 3.8
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 3.8
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 6.6
10_08_0535 + 18613223-18613717,18615858-18616373 28 8.8
07_03_1107 - 24024387-24024497,24025799-24026410 28 8.8
07_01_0942 + 7957776-7958004,7958113-7958708 28 8.8
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881... 28 8.8
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 28 8.8
>08_02_1012 + 23550314-23551504
Length = 396
Score = 33.1 bits (72), Expect = 0.31
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 441 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQ 572
P P P VP S +S+PP R + PP A++ QPT E+
Sbjct: 170 PRPASPPPVPA-APEVASAVSTPPARPKRGRPPRAAKPQPTPER 212
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 33.1 bits (72), Expect = 0.31
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +3
Query: 411 WNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSS 590
WN + Q P +RSP P+ +H PP+R+E++ +S E + V +
Sbjct: 37 WNWFPSQSQSPTTQRSPICPIKSNH-------PPIRSESVQAAESSTSIWPNESIAVQNI 89
Query: 591 LPDAVLYTLLRKL-ERIRGDDATRTNESXMCAQE 689
+ L L R L E I D T + + A +
Sbjct: 90 ASKSSLGCLSRMLTESIHADVTINTTDGVLKAHK 123
>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
Length = 369
Score = 32.3 bits (70), Expect = 0.54
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 339 WILRYNPDEDNIWSARAVADTSTQWNTYS 425
WILR + D+D +W+ A+ D + W+ ++
Sbjct: 234 WILRMDDDDDMVWTMDAMVDATELWSLHA 262
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 32.3 bits (70), Expect = 0.54
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 441 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 596
P+P +P+ P SG S+P T P+ P+ +Q RV S P
Sbjct: 28 PSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSPAPSPQQQRVASPPP 79
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +3
Query: 441 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRV 581
P P S VPLP SG+ PP PP S+V P QL V
Sbjct: 46 PPPPGSTFVPLP----QSGVPPPPPLGSFFVPPPQSRVPPPPPQLGV 88
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +3
Query: 378 SARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQ 557
+A A +ST ++ +R+ S PAP P+ P P H S + ++ PP+ SQ Q
Sbjct: 344 AAIPAAGSSTPSSSQARKASAPAPPSPPEPPSP-RHPASPPLLRSLPHQPTPPPSPSQ-Q 401
Query: 558 PT 563
PT
Sbjct: 402 PT 403
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +3
Query: 390 VADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNE--TLTPPAA--SQVQ 557
V T++ +T S P P S +P T+ LSSP + + PPA +
Sbjct: 711 VNSTTSLQSTPSTSFPSPVPTTSNNNMMPAPQNTNQLSSPTASSNLPPMQPPATRPQEPD 770
Query: 558 PTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTN 665
P E Q V L D ++ + + ++ G+D R N
Sbjct: 771 PNESQSSVQRILQDLMMSPQMNGVGQL-GNDMKRPN 805
>08_01_0039 + 284948-285301
Length = 117
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 577 RSCSSVGCTWL-AAGGVRVSLRTGGLLRPEVQ*EPGSGTLGDRSGAGHDTC 428
RSC VG W GG + S+R GG R G+ G+ GAG C
Sbjct: 25 RSCGDVGGWWAGVGGGGKASMRLGGGGRWWRIQRRGAAGDGEDGGAGESRC 75
>07_03_1026 - 23369298-23370326
Length = 342
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +3
Query: 504 SPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTNESXMCA 683
SPPVR+ T PAAS + +E T +R +RGDDAT C
Sbjct: 202 SPPVRSARATTPAASPSRSKKE--------------TPVRAHAAVRGDDATPPRAIKKCK 247
Query: 684 QECRFCKNNGERA 722
+ R + +GE A
Sbjct: 248 SDERRQEKDGESA 260
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 447 PERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRK 626
P K P S+ +S ++P N + +PP + + VLS L A+ YT +K
Sbjct: 161 PANPNKARHPSSNKSSSPAAPRRTNSSSSPPNLAIAVGAVLAILVLSLLGAAIWYTTKKK 220
Query: 627 LERIRGDDATR 659
++ R D+ R
Sbjct: 221 KKQRRRDNGYR 231
>04_04_1477 + 33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/89 (23%), Positives = 40/89 (44%)
Frame = +2
Query: 287 IGKCSLDDAMKEFRLNGLDSPXQSRRGQHLERASSCRYIDPMEHVLQAGVVASPRTVSQG 466
+G+ S+D+ K++RL +S + + H+++ P+ +Q A + S
Sbjct: 843 VGRSSMDNLSKDYRLGRRESSGKV-KSDHVDQEPRISNSTPLPSYMQFTESARAK-ASAS 900
Query: 467 TAPGLSLDFRSEQPSCAQ*DPDTSCRQPS 553
+P LS D + P P T+ +Q S
Sbjct: 901 VSPKLSPDVQDNNPRKRHSLPMTNGKQDS 929
>10_08_0535 + 18613223-18613717,18615858-18616373
Length = 336
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +3
Query: 447 PERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPT-EEQLRVLSSLPDAVLYTLLR 623
PER +PL G + P + + L PPA Q PT + R +S + R
Sbjct: 39 PERRGFIPLADRIRDLGAAFPRINLDGLVPPAPPQTHPTVAREERASASAVAGLTVEEAR 98
Query: 624 KLERIRGDDATR 659
K+ R +A R
Sbjct: 99 KVLRATQMEAAR 110
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 447 PERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDA 602
P +S K P P + + PP + + P AS P E + + PDA
Sbjct: 88 PTKSTKAPAPAPK-AAKATPPPASSPPVEAPVASPPSPAAEAPATIPTKPDA 138
>07_01_0942 + 7957776-7958004,7958113-7958708
Length = 274
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 468 PLPGSHWTSGL-SSPPVRNETLTPPAASQVQPTEEQLRVLSSL 593
P GS WTS + PPVR+ PP + + P + +S L
Sbjct: 51 PTGGSWWTSASWTCPPVRSSGRCPPGVTFIYPFLVPILCMSGL 93
>01_05_0224 +
19485296-19485493,19485584-19487817,19487903-19488154,
19488235-19488345,19488435-19488516,19488791-19488982
Length = 1022
Score = 28.3 bits (60), Expect = 8.8
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +3
Query: 366 DNIWSARAVA-DTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTS--GLSSPPVRNETLTP 536
D I SA +A +ST ++ + + PAP PK P P H S L SPP + P
Sbjct: 542 DIILSAAVLAAGSSTPSSSQAMTAAAPAPPSPPKPPSP-RHPPSPPPLRSPP--RQPTPP 598
Query: 537 PAASQVQP 560
P+ SQ P
Sbjct: 599 PSPSQQPP 606
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 492 SGLSSPPVRNETLTPPAASQ 551
S SSPP N+T TPP A+Q
Sbjct: 2 SSPSSPPPANQTATPPPANQ 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,179,420
Number of Sequences: 37544
Number of extensions: 542908
Number of successful extensions: 1956
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1953
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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