Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G24
(898 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46970| Best HMM Match : zf-nanos (HMM E-Value=2.6e-35) 37 0.019
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 30 2.2
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17) 30 2.2
SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 3.9
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 29 5.1
SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07) 29 6.7
SB_27220| Best HMM Match : Seryl_tRNA_N (HMM E-Value=3.2) 29 6.7
SB_33413| Best HMM Match : DUF81 (HMM E-Value=0.31) 28 8.9
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0) 28 8.9
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 8.9
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_3557| Best HMM Match : Phage_integrase (HMM E-Value=1.4) 28 8.9
>SB_46970| Best HMM Match : zf-nanos (HMM E-Value=2.6e-35)
Length = 216
Score = 37.1 bits (82), Expect = 0.019
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +3
Query: 585 SSLPDAVLYTLLRKLERIRGDDATRTNESXMCAQECRFCKNNGERAAYYRSHALRD 752
S LP T ++ + R N+ A C FC+NNGE Y SH L+D
Sbjct: 117 SLLPGTRSLTKRTDIDTAARNRKNRENKKNRNANVCVFCRNNGESKKVYSSHVLKD 172
Score = 32.3 bits (70), Expect = 0.55
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 760 GRVACPVLXAFVCARCXARGDPXXTAKXWPR 852
G CP+L A+ C C A G T K P+
Sbjct: 175 GNTTCPILRAYTCPLCKASGSQSHTIKYCPK 205
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 218 YLGLTKTNPPSSHFRNHYNCNISCL 144
YL LT TNPP+SH H + IS L
Sbjct: 644 YLTLTVTNPPASHTYRHKSTGISHL 668
>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
Length = 505
Score = 30.3 bits (65), Expect = 2.2
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +3
Query: 414 NTYSRQVSWPAPERS-----PKVPLPGSHWTSGLSSP-PVRNETLTPPAASQVQPTEEQL 575
N SR S PAP R K P PGS + SP P R+ T TPP S V+ T+ QL
Sbjct: 292 NHASRSQS-PAPPRGRSLKRSKSPAPGSAAAARSRSPSPARSSTSTPPTISSVK-TKLQL 349
>SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -3
Query: 494 GSPVRARERYLGRPFGGWP-RHLPGVRV-PLG 405
G PVR + Y RP GG+P RH+ G V P+G
Sbjct: 904 GYPVRPKSGYPVRPMGGYPVRHVGGYPVRPVG 935
>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 789
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 580 C*ARCRTPCSTPC*GSWRESGETTR--PGRMNP 672
C ++CRTP T C G W S T P R+ P
Sbjct: 100 CDSQCRTPGETKCGGEWASSVYETGYVPDRLKP 132
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 450 ERSPKVPLPGSHWTSGLSSPPVRNETLTPPAAS 548
E + K+P P S S SPP ++ TL+P ++S
Sbjct: 1659 EDNVKIPPPASEHGSVAGSPPTQSPTLSPSSSS 1691
>SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)
Length = 389
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 230 NEVEYLGLTKTNPPS-SHFRNHYNCNISCLYT*FCLSYELSSRMFQSXNHTIA 75
++VEYL +T P SH R+ + L T CL L +R +++ +H+ A
Sbjct: 166 SKVEYLNALQTKPTLVSHMRHVVVIRLVRLVTSSCLMQRLKARGYRNPDHSRA 218
>SB_27220| Best HMM Match : Seryl_tRNA_N (HMM E-Value=3.2)
Length = 517
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 504 SPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTNES 671
+PP++ + AAS + + Q + L D++L +L+ ++R DDA R N +
Sbjct: 76 NPPLQTGNIRSEAASALPSSILQADFVELLKDSLLTSLVDTVKRSLIDDANRQNSA 131
>SB_33413| Best HMM Match : DUF81 (HMM E-Value=0.31)
Length = 455
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 147 LVYVILFKL*IKFPNVPEXESHHRTRQEHTAGIKILREFPXXKS 16
+V ++LF + + FPN P+ H Q+ G+K L+ KS
Sbjct: 260 MVILLLFCVIVYFPNKPKLPPSHSKAQKSIGGVKGLQMLCLKKS 303
>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
Length = 2376
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 242 SDWNATKSSSIANLMIGKCSLDDAMK 319
SDW + + NL++GK S DA K
Sbjct: 2293 SDWRTYREGLVENLVLGKMSRQDAAK 2318
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 447 PERSPKVPLPGSHWT--SGLSSPPVRNETLTPPAASQVQPTE 566
P+RSP P S S + +P +++ + PPA+ PTE
Sbjct: 433 PQRSPSASKPSSRPPPLSSVQNPSKQDKKVIPPASLNAAPTE 474
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 504 SPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTNES 671
+PP++ + AAS + + Q + L D++L +L+ ++R DDA R N +
Sbjct: 11 NPPLQTGNIQSDAASALPSSILQADFVELLKDSLLPSLVDTVKRSLIDDANRQNSA 66
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 418 VFHWVDVSATARALQMLSSSGLXRRIQAVQSE--LLHRVI 305
+ HW V A+A+++L G IQA +++ LHR +
Sbjct: 121 LIHWATVLGKAKAIELLIQKGFNPAIQAEETKETALHRFV 160
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 423 SRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDA 602
SR S A +P P S + ++SP V TL+PP + QP+ L + P A
Sbjct: 884 SRYASTQAATSAPYASPPPSPYQQ-ITSPQVMQSTLSPPDSQYNQPSVSTQGSLDNQPRA 942
>SB_3557| Best HMM Match : Phage_integrase (HMM E-Value=1.4)
Length = 183
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 504 SPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTN----ES 671
+PP++ + AAS + + Q + L D++L +L+ ++R DDA R +
Sbjct: 11 NPPLQTGNIQSEAASALSSSILQADFVELLKDSLLPSLVDTVKRSLIDDANRAKLCPPDK 70
Query: 672 XMCAQEC 692
+C EC
Sbjct: 71 LLCPCEC 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,044,176
Number of Sequences: 59808
Number of extensions: 574060
Number of successful extensions: 2146
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2138
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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