Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G24
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              41   1e-05
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   3.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.7  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +3

Query: 687 ECRFCKNNGERAAYYRSHALRD 752
           EC FC+NNGE  AYYR H L+D
Sbjct: 39  ECVFCRNNGEEEAYYRKHLLKD 60



 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 760 GRVACPVLXAFVCARCXARGDPXXTAKXWPR 852
           GRV+CPVL A+ C  C A GD   T K  P+
Sbjct: 63  GRVSCPVLRAYTCPICGACGDIAHTVKYCPK 93


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 531 SGSHCAQEGCSDRKSS 484
           +G HC + GC  RK+S
Sbjct: 70  AGGHCEKVGCICRKTS 85


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 341 PSRSV*TPSSRHPESIYRSSD 279
           P RS+ +   R+P SI+R +D
Sbjct: 377 PRRSIYSSLLRYPRSIFRQTD 397


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 441 PAPERSPKVPLPGSHWTSGLSSPP 512
           P+P +SP+ P  GS        PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 352 TIPTRTTSGAREQLQIHRP 408
           T+PT T SG+  +L  H P
Sbjct: 366 TLPTSTYSGSPTELPKHLP 384



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 531 SGSHCAQEGCSDRKSSESPGAV 466
           S S    EG +DR+ SES  +V
Sbjct: 417 SSSAAGGEGLADRRGSESSDSV 438


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 486 WTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDA 602
           W  G +   +R  TL PP   +VQ   +        PD+
Sbjct: 625 WFDGFNWEGLRARTLEPPIMPRVQNATDTTNFDEYPPDS 663


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,302
Number of Sequences: 438
Number of extensions: 4935
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)