Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G24
         (898 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p...    32   0.45 
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela...    31   0.78 
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela...    31   0.78 
At1g64340.1 68414.m07291 hypothetical protein                          31   1.0  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    29   3.2  
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    29   3.2  
At2g40190.1 68415.m04942 glycosyl transferase family 1 protein c...    29   4.2  
At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibia...    29   5.5  
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein         28   7.3  
At4g34440.1 68417.m04894 protein kinase family protein contains ...    28   7.3  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   7.3  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   7.3  
At1g02850.4 68414.m00250 glycosyl hydrolase family 1 protein con...    28   7.3  
At1g15720.1 68414.m01886 myb family transcription factor contain...    28   9.7  

>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 534

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 450 ERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEE---QLRVLSSLPDAVLYTLL 620
           ++ P +  PG+  ++   SP +R   LTP A  + Q   E   Q RV + LP++ LYT L
Sbjct: 111 QQKPPMRPPGAPASNNTISP-MRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQL 169

Query: 621 RKLE 632
            + E
Sbjct: 170 LEFE 173


>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
           / hRIP protein-related similar to SP|P52594
           Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
           (Rev interacting protein) (Rev/Rex activation
           domain-binding protein) {Homo sapiens}; contains Pfam
           profile PF01412: Putative GTPase activating protein for
           Arf
          Length = 602

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = +3

Query: 357 PDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLP------GSHWTSGLSSP--P 512
           P E  + +A ++ D  T + T +  V+  AP  +   P P        +W S  ++P  P
Sbjct: 273 PPEVKLETALSLIDFDTDFETPAPSVAIQAPLSTTSQPAPQPTTSSNDNWASFDAAPSAP 332

Query: 513 VRNETLTPPAASQVQPTEEQLRVLSSLP 596
             N +  PP+ + +     QL V SS+P
Sbjct: 333 SLNVSQPPPSGNTLDSLLSQLAVTSSVP 360


>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
           / hRIP protein-related similar to SP|P52594
           Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
           (Rev interacting protein) (Rev/Rex activation
           domain-binding protein) {Homo sapiens}; contains Pfam
           profile PF01412: Putative GTPase activating protein for
           Arf
          Length = 602

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = +3

Query: 357 PDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLP------GSHWTSGLSSP--P 512
           P E  + +A ++ D  T + T +  V+  AP  +   P P        +W S  ++P  P
Sbjct: 273 PPEVKLETALSLIDFDTDFETPAPSVAIQAPLSTTSQPAPQPTTSSNDNWASFDAAPSAP 332

Query: 513 VRNETLTPPAASQVQPTEEQLRVLSSLP 596
             N +  PP+ + +     QL V SS+P
Sbjct: 333 SLNVSQPPPSGNTLDSLLSQLAVTSSVP 360


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +3

Query: 372 IWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQ 551
           +W   +    S + N+++RQ++      +  + +P  H    LSSPP  +ET +     Q
Sbjct: 122 VWDCESTLYDSFELNSFNRQLNSAISSSARSMSMP--H----LSSPPPPSETTSSSTKKQ 175

Query: 552 VQPTEEQLRVLSSL 593
             PT++  R L  L
Sbjct: 176 QSPTKKISRSLGKL 189


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 441 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEE 569
           P PE SP VP P    +S +SSPPV       P A    P  +
Sbjct: 85  PVPESSPPVPAPMV--SSPVSSPPVPAPVADSPPAPVAAPVAD 125


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
            similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +3

Query: 501  SSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTNESXMC 680
            +S P ++ T+    AS  +  ++    +SS  D ++  +L++L      +AT    +  C
Sbjct: 834  ASRPPQDRTMV--VASLAEVAQDMGLPISSYVDRLMPLVLKELG---SPEATNRRNAAFC 888

Query: 681  AQECRFCKNNGERAAYYRSHALR 749
              E   CKN GE A  Y    LR
Sbjct: 889  VGE--LCKNGGETALKYFGDVLR 909


>At2g40190.1 68415.m04942 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 463

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +3

Query: 372 IWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQ 551
           + S   +A  ++ W     +V W  PER  +V  P    TSGL + P+   +  P   S 
Sbjct: 217 VGSCTHLAMVNSSWTKSHIEVLWRIPERITRVYPPCD--TSGLQAFPLERSSDPPKIISV 274

Query: 552 VQPTEEQLRVL 584
            Q   E+  +L
Sbjct: 275 AQFRPEKAHML 285


>At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 396

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 363 EDNIWSARAVADTSTQWNTYSRQVSWPAPE 452
           +DN  S   +AD + +W +Y+R  SW  P+
Sbjct: 218 QDNWKSMTLIADQNDRWASYARPGSWNDPD 247


>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 
          Length = 911

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query: 360 DEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGL--SSPPVRNETLT 533
           ++D I SAR +A+  T  +TY+ +V  P    S +       W S +  SS P  +ET  
Sbjct: 722 EDDIIDSARLLAEEETAASTYTEEVDTPVGSSSEE---SDDFWKSFINPSSSPSPSETEN 778

Query: 534 PPAASQVQPTEE 569
               +  +P  E
Sbjct: 779 MNKVADTEPKAE 790


>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 441 PAPERSPKVPLPGSHWTSGLSSPPVR-NETLTPPAASQVQPTEEQLRVLSSLP 596
           P+ E SP  P P S   S +S+PP   + + +PP A   Q T       SS P
Sbjct: 26  PSNESSPPTP-PSSPPPSSISAPPPDISASFSPPPAPPTQETSPPTSPSSSPP 77


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 468 PLPGSHWTSGLSSPPVRNETLT-PPAASQVQPT 563
           P PG+  +    SPP  + T T PPAAS   PT
Sbjct: 5   PSPGTTPSPSPPSPPTNSTTTTPPPAASSPPPT 37


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 441 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDA 602
           PAP R  + P P +      S P  R  + +PPA     PT    +  S  P A
Sbjct: 304 PAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPA 357


>At1g02850.4 68414.m00250 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to hydroxyisourate hydrolase (GI:19569603)
           [Glycine max]
          Length = 471

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +3

Query: 504 SPPV---RNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRG 644
           +PPV    N  +TP ++S V  T  +++ LSS   AVL++L RK   ++G
Sbjct: 365 NPPVYILENGQMTPHSSSLVDTT--RVKYLSSYIKAVLHSLSRKGSDVKG 412


>At1g15720.1 68414.m01886 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 390

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 284 MIGKCSLDDAMKEFRLNGLDSPXQSRRGQHLERASSCRYIDPMEH 418
           ++G  SL+   ++  L   DSP  SRRG + E+A+    +  +E+
Sbjct: 181 LLGCSSLESEARKRFLKRKDSPYASRRGGNREKANDVEEVGGVEN 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,293,768
Number of Sequences: 28952
Number of extensions: 389189
Number of successful extensions: 1254
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)