Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G23
         (901 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P61165 Cluster: UPF0197 protein C11orf10; n=38; Eukaryo...    92   2e-17
UniRef50_Q32P84 Cluster: UPF0197 protein C11orf10 homolog; n=2; ...    92   2e-17
UniRef50_Q965T1 Cluster: UPF0197 protein Y57E12AM.1; n=2; Caenor...    50   1e-04
UniRef50_UPI0000E4641D Cluster: PREDICTED: similar to conserved ...    43   0.012
UniRef50_Q8LCF2 Cluster: Putative uncharacterized protein; n=6; ...    37   0.81 

>UniRef50_P61165 Cluster: UPF0197 protein C11orf10; n=38;
           Eukaryota|Rep: UPF0197 protein C11orf10 - Homo sapiens
           (Human)
          Length = 79

 Score = 92.3 bits (219), Expect = 2e-17
 Identities = 43/79 (54%), Positives = 52/79 (65%)
 Frame = +1

Query: 130 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVA 309
           +E+E+M RYTSP+NPAVFPH             AWFFVYEVTSTK +RD++KELL+SLVA
Sbjct: 1   MELEAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVA 60

Query: 310 AXXXXXXXXXXXXWVGIYV 366
           +            WVGIYV
Sbjct: 61  SLFMGFGVLFLLLWVGIYV 79


>UniRef50_Q32P84 Cluster: UPF0197 protein C11orf10 homolog; n=2; Bos
           taurus|Rep: UPF0197 protein C11orf10 homolog - Bos
           taurus (Bovine)
          Length = 79

 Score = 91.9 bits (218), Expect = 2e-17
 Identities = 42/79 (53%), Positives = 52/79 (65%)
 Frame = +1

Query: 130 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVA 309
           +E+E+M RYTSP+NPAVFPH             AWFFVYEVTSTK +RD++KELL+SLVA
Sbjct: 1   MELEAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVA 60

Query: 310 AXXXXXXXXXXXXWVGIYV 366
           +            WVGIY+
Sbjct: 61  SLFMGFGVLFLLLWVGIYI 79


>UniRef50_Q965T1 Cluster: UPF0197 protein Y57E12AM.1; n=2;
           Caenorhabditis|Rep: UPF0197 protein Y57E12AM.1 -
           Caenorhabditis elegans
          Length = 79

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = +1

Query: 130 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVA 309
           ++I  M RYT+P+N A  P              A F + +VTSTK +R++ KEL ++  +
Sbjct: 1   MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60

Query: 310 AXXXXXXXXXXXXWVGIYV 366
           +            WVGIYV
Sbjct: 61  SVFLGFGSVFLLLWVGIYV 79


>UniRef50_UPI0000E4641D Cluster: PREDICTED: similar to conserved
           hypothetical protein; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to conserved
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 148

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 19/39 (48%), Positives = 21/39 (53%)
 Frame = +1

Query: 127 SLEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXAWFFV 243
           S  IESM RY SP+NPAV+PH             AWF V
Sbjct: 22  SAAIESMTRYVSPVNPAVYPHLTLILLTIGIFFMAWFLV 60


>UniRef50_Q8LCF2 Cluster: Putative uncharacterized protein; n=6;
           Magnoliophyta|Rep: Putative uncharacterized protein -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 76

 Score = 36.7 bits (81), Expect = 0.81
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +1

Query: 160 SPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXXX 339
           SPI  A++P              A FF+YE TS++ +R + KEL  S VA+         
Sbjct: 8   SPIPVALYPTLSVFTLAIGLVITAIFFIYEATSSRKNRSVGKELATSAVASVFLGFGSLF 67

Query: 340 XXXWVGIYV 366
                G+YV
Sbjct: 68  LLLASGVYV 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,273,332
Number of Sequences: 1657284
Number of extensions: 8994792
Number of successful extensions: 21472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21437
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)