Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G23
         (901 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29735.1 68417.m04234 expressed protein contains Pfam domain ...    37   0.021
At2g28780.1 68415.m03499 expressed protein                             29   4.2  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    28   7.3  
At2g30630.1 68415.m03732 expressed protein similar to H1-1flk [A...    28   9.7  

>At4g29735.1 68417.m04234 expressed protein contains Pfam domain
           PF05251: Uncharacterised protein family (UPF0197)
          Length = 76

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +1

Query: 160 SPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXXX 339
           SPI  A++P              A FF+YE TS++ +R + KEL  S VA+         
Sbjct: 8   SPIPVALYPTLSVFTLAIGLVITAIFFIYEATSSRKNRSVGKELATSAVASVFLGFGSLF 67

Query: 340 XXXWVGIYV 366
                G+YV
Sbjct: 68  LLLASGVYV 76


>At2g28780.1 68415.m03499 expressed protein
          Length = 796

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 15  TDFTIGNSLRFCWLAL 62
           TD T+G++LR CWLAL
Sbjct: 58  TDATLGDTLRGCWLAL 73


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 216  SYSEQQKG*MWKNCRVYWRRVPDH--RFNF 133
            SY  Q +  +WK  + YWR VP +  RF+F
Sbjct: 1131 SYLSQFQACLWKQHKSYWRNVPYNAVRFSF 1160


>At2g30630.1 68415.m03732 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 531

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 218 YSSRPGSSFTKLQVLKPQEICSKSYF-YHW*PPYFLVSECCS 340
           +S  PG+    +++++  E C  SYF YHW     ++S+  S
Sbjct: 116 FSEEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQILS 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,837,171
Number of Sequences: 28952
Number of extensions: 201152
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)