Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G22
(885 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 32 0.54
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 32 0.54
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062) 32 0.71
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 0.86
SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72) 31 1.6
SB_16232| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23) 30 2.2
SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8) 30 2.2
SB_56101| Best HMM Match : efhand (HMM E-Value=0.029) 30 2.9
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 30 2.9
SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0) 30 2.9
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39) 29 3.8
SB_6609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_4516| Best HMM Match : rve (HMM E-Value=6.5) 29 5.0
SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14) 29 6.6
SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12) 29 6.6
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_4506| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_59489| Best HMM Match : RnaseH (HMM E-Value=0.0047) 29 6.6
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 29 6.6
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 29 6.6
SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_51440| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5) 29 6.6
SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 6.6
SB_14196| Best HMM Match : FG-GAP (HMM E-Value=0) 29 6.6
SB_4690| Best HMM Match : rve (HMM E-Value=1.5) 29 6.6
SB_4584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068) 28 8.7
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 39.1 bits (87), Expect = 0.005
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -1
Query: 564 HCIADTDTAPSKQPALNGTPSPISARTKPPSVSLSTATSS--IEDDMSIP-IHICPFSSS 394
H ++ PS P+ + +P+P S + PS + S+ SS + +S P I P S+
Sbjct: 482 HPSSNPSPNPSPNPSSDPSPNPSSNPSSDPSPNPSSNPSSEPSPNPISNPSISTSPISNP 541
Query: 393 TVPDNPEPHPISNNKHDESSGNRSN 319
NP PHP SN + S SN
Sbjct: 542 HPSSNPSPHPSSNPSSEPSPNPSSN 566
Score = 33.9 bits (74), Expect = 0.18
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -1
Query: 549 TDTAPSKQPALNGTPSPISARTKPPSVSLSTATSS--IEDDMSIP-IHICPFSSSTVPDN 379
T + P+ N +P P S + PS + S+ SS + S P + P SSS+
Sbjct: 535 TSPISNPHPSSNPSPHPSSNPSSEPSPNPSSNPSSDPSPNPSSDPSLSFSPSSSSSPSVR 594
Query: 378 PEPHPISN-NKHDESSGNRS 322
P P+ ISN N++ S+ NR+
Sbjct: 595 PSPNLISNPNRNSNSNSNRN 614
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -1
Query: 489 RTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEPHPISNNKHDESSGNRSN 319
+T P + S +TS I + P H P SS NP P+P S+ + SS S+
Sbjct: 455 KTSNPISNPSISTSPISNPSPRP-HPSPHPSSNPSPNPSPNPSSDPSPNPSSNPSSD 510
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 555 ADTDTAPSKQPALNGTPSPISARTKPPSVSL-STATSSIEDDMSIPIHICPFSSSTVPDN 379
+D PS P+L+ +PS S+ + PS +L S + + + + S ++ N
Sbjct: 569 SDPSPNPSSDPSLSFSPSSSSSPSVRPSPNLISNPNRNSNSNSNRNPNPSSNPSPSLSPN 628
Query: 378 PEPHPISNNKHDESSGNRSN 319
P P+P ++ + SS N
Sbjct: 629 PSPNPSTSPYRNHSSNTNPN 648
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 32.3 bits (70), Expect = 0.54
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -1
Query: 543 TAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEPHP 364
+AP ++ N ART+P T TS++ + P+ P P HP
Sbjct: 306 SAPRRENLYNENNQHGHARTQPQVYREPTRTSTVAHSIPAPVASVPQPPPQPAQQPASHP 365
Query: 363 ISNNKHDES 337
++++ DE+
Sbjct: 366 SASSRQDEA 374
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 32.3 bits (70), Expect = 0.54
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 549 TDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSI-PIHICPFSSS 394
T A KQP G+P+P+ + PPS + S A S ++ P H P SS+
Sbjct: 314 TPQASMKQPIAAGSPTPLKGSSIPPSPNRSPAASPAPSPSAVKPFH--PVSSA 364
>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
Length = 282
Score = 31.9 bits (69), Expect = 0.71
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 543 TAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEP 370
T P K AL +P P PP S + +S S+ + PF S+ +P +P P
Sbjct: 23 TPPFKSAALPSSPQPSLQVQSPPFKSAALPSSP---QPSLQVRTPPFKSAALPSSPHP 77
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 543 TAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEP 370
T P K L +P P PP S + +S S+ +H PF S+ P +P+P
Sbjct: 83 TPPFKSAPLPLSPQPSLQVRSPPFKSAAFPSSP---QPSLQVHSPPFKSAAFPSSPQP 137
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 537 PSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEP 370
P K A +P P S + + P + SS + S+ +H PF S+ +P +P P
Sbjct: 205 PFKSAAFPSSPQP-SLQVRTPLFKSAALPSSPQP--SLQVHTPPFKSTPLPSSPHP 257
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 537 PSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEP 370
P K AL +P P PP S + +S S+ + PF S+ +P +P+P
Sbjct: 45 PFKSAALPSSPQPSLQVRTPPFKSAALPSSP---HPSLQVRTPPFKSAPLPLSPQP 97
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 25.4 bits (53), Expect(2) = 0.86
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 408 PFSSSTVPDNPEPHPISNNKHDESSGNR 325
PF + P PEP P+S K G R
Sbjct: 1305 PFDDTPTPSRPEPGPLSVVKAISRRGKR 1332
Score = 24.6 bits (51), Expect(2) = 0.86
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = -1
Query: 573 LNNHCIADTDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIP 421
+ +H + T AP+ PA + + +P + +S+++++ + +MS+P
Sbjct: 1227 ITSHGTSSTP-APNSTPAKRTRGRGVKVKDEPETPVISSSSATSQTEMSLP 1276
>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
Length = 529
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +2
Query: 362 IGCGSGLSGTVLEENGHMWIGMDISSSMLDVAVERDTEGGLVLADMGEGVPFRAGCFDGA 541
IGCG+G ++ + G D +++A ER E + L D +P+R C D
Sbjct: 56 IGCGTGKYLSISTDA--FITGSDCCPKFVEIARERQHE--VSLCD-NLSLPYRDDCLDAV 110
Query: 542 VSVSAIQWLFNADKK 586
+SV I L ++ ++
Sbjct: 111 ISVGVIHHLASSKRR 125
>SB_16232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIED 436
+LNN D D P +PA NG P RT P + L+ I++
Sbjct: 208 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGIMLNHVERDIKE 253
>SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)
Length = 898
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 498 ISARTKPPSVSLSTATSSIEDDMSI-PIHICPFSSSTVPDNPEPHPISNNKHDE 340
+ TKPP + T T +D+ S+ PI+ P++ + P P SN+ HD+
Sbjct: 329 VGKSTKPPPATPRTTT---KDEASMRPIYSVPYTGKSHALTPTPTENSNSSHDK 379
>SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)
Length = 498
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = -1
Query: 519 LNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSST 391
++G +PIS S+S STA+SS +P + PFSSST
Sbjct: 132 ISGEGTPISMSNHSASLSSSTASSSSFPPCGVPSN-TPFSSST 173
>SB_56101| Best HMM Match : efhand (HMM E-Value=0.029)
Length = 361
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -1
Query: 552 DTDTAPSKQPALNGTP----SPISARTKPPSVSLSTATSSI 442
D DTA S + +NG+P S +S+RTK +VSL A SI
Sbjct: 8 DGDTATSSKEKVNGSPFEEESVLSSRTKVLTVSLLVALLSI 48
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -1
Query: 489 RTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEPHPISNNKHDESSGNRSNSK 313
RT+PP+V+ T T+ + S + +S + NP P+ + K + G S+++
Sbjct: 73 RTEPPTVTSGTNTNMTKSPFSSLSNALSTIASIITSNPFTKPMPSYKSNRHDGTNSSTE 131
>SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 824
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -1
Query: 429 SIPIHICPFSSSTVPDNPEPHPISNNKHDESSGNRSNSKHLS 304
S+P + + + P+ P P P S++KH++ + ++ +H S
Sbjct: 457 SLPAQLNYEIAGSSPNKPTPKPQSDSKHEQGTPDKKKKRHRS 498
>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
Length = 1486
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = -1
Query: 501 PISARTKP-PSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEPHPISNNKHDESSGNR 325
P RT+ PSV+ T+T S + S+P P T +P PI ++H ++ R
Sbjct: 1044 PSRGRTRSNPSVTTETSTLSKQKRPSLPCRAYPV---TREPSPIRKPIQPSEHAQTVPRR 1100
Query: 324 SNS--KHLSVICXLDFYDP 274
NS ++C + +P
Sbjct: 1101 KNSAGNTYGLVCQISAVEP 1119
>SB_6609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 402 SSSTVPDN--PEPHPISNNKHDESSGNRSNSKH 310
S+S++ +N P H +KHD+ S N+ SKH
Sbjct: 118 STSSLANNTIPSKHDKRTSKHDDGSNNKRTSKH 150
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -1
Query: 540 APSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNP 376
+PS+ P+LN P+P S+ T PPS S T+S S + P SS V P
Sbjct: 958 SPSEAPSLN-NPNPRSSCTTPPS---SDTTNSSSAGPSATNNASPSSSPYVASAP 1008
>SB_4516| Best HMM Match : rve (HMM E-Value=6.5)
Length = 262
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 200 SLNNTSATD-DYEPVSEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 243
>SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14)
Length = 691
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 629 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 672
>SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)
Length = 1020
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 549 TDTAPSKQPALNGTPSPI-SARTKPPSVSLSTATSSIEDDMSI-PIHICPFSSSTVPDNP 376
T T PS + T P+ S T+ + S +T+ I+ S PI P ++ST P P
Sbjct: 310 TATKPSTFQPQSSTRHPLTSITTRTTPIKPSPSTTPIKPSPSTTPIKPSPSTTSTTPIKP 369
Query: 375 EPH 367
P+
Sbjct: 370 SPN 372
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 303 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 346
>SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 731 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 774
>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 437 MICPSQSTYVHFLLALYQIILNHIQYPTTSMMNLPVIEVILSI 309
M+C T V ++AL I NH +P + +P+I ++L++
Sbjct: 500 MLCVYGVTAVAAVIALGAIPQNHASFPYMVPLAVPIISILLNV 542
>SB_4506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 22 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 65
>SB_59489| Best HMM Match : RnaseH (HMM E-Value=0.0047)
Length = 567
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 505 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 548
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 272 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 315
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 1176 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 1219
>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 862 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 905
>SB_51440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 37 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 80
>SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5)
Length = 779
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +2
Query: 563 WLFNADKKTHNPVKRLNKFFTTLYSSLSRSARAVFQFYPENEKQLELLTTQAMKAGFY 736
W+ + + N V+R+ + T S S S A Q Y E +E L A Y
Sbjct: 403 WIASGIARDLNDVRRIQQLLVTKLSKFSTSKEAALQLYNEAATTMEKLAVLKAWAEVY 460
>SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 921
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 859 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 902
>SB_14196| Best HMM Match : FG-GAP (HMM E-Value=0)
Length = 693
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 387 PDNPEPHPISNNKHDESSGNRSNSKHLS 304
P+ P P P S++KH++ + ++ +H S
Sbjct: 4 PNKPTPKPQSDSKHEQGTPDKKKKRHRS 31
>SB_4690| Best HMM Match : rve (HMM E-Value=1.5)
Length = 282
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 220 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 263
>SB_4584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 576 ALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSV-SLSTATSS 445
+LNN D D P +PA NG P RT P + ST T S
Sbjct: 53 SLNNTSATD-DYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQS 96
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = -1
Query: 543 TAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEPH 367
TAP++ TP+P + K P+ + ST T P P + + P H
Sbjct: 62 TAPTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHTPTTPTPTAH 120
>SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)
Length = 919
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 555 ADTDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMS 427
A+ TAP + L P P S +++ P+V S+ SS E+++S
Sbjct: 135 AEQPTAPEESELLE-PPCPPSTQSEEPAVGTSSQCSSPEEEIS 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,913,788
Number of Sequences: 59808
Number of extensions: 500240
Number of successful extensions: 1578
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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