Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G21
         (889 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P22087 Cluster: rRNA 2'-O-methyltransferase fibrillarin...    78   3e-13
UniRef50_Q6AT27 Cluster: Putative fibrillarin protein; n=2; Oryz...    76   1e-12
UniRef50_UPI0000DD7D0A Cluster: PREDICTED: similar to fibrillari...    66   1e-09
UniRef50_Q5A0V8 Cluster: Putative uncharacterized protein; n=1; ...    56   9e-07
UniRef50_Q2PET2 Cluster: Putative fibrillarin homolog; n=1; Trif...    51   5e-05
UniRef50_Q3LWE7 Cluster: Nucleolar protein fibrillarin; n=1; Big...    40   0.11 
UniRef50_Q9VG21 Cluster: CG10909-PA; n=2; Sophophora|Rep: CG1090...    40   0.11 
UniRef50_Q4QDL1 Cluster: Fibrillarin, putative; n=3; Leishmania|...    38   0.26 
UniRef50_A5AT06 Cluster: Putative uncharacterized protein; n=1; ...    37   0.79 
UniRef50_Q74N89 Cluster: Fibrillarin-like rRNA/tRNA 2'-O-methylt...    36   1.0  

>UniRef50_P22087 Cluster: rRNA 2'-O-methyltransferase fibrillarin;
           n=162; cellular organisms|Rep: rRNA
           2'-O-methyltransferase fibrillarin - Homo sapiens
           (Human)
          Length = 321

 Score = 78.2 bits (184), Expect = 3e-13
 Identities = 37/51 (72%), Positives = 40/51 (78%), Gaps = 3/51 (5%)
 Frame = +2

Query: 392 RAGGGFKG---GKQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKR 535
           R  GG +G   GK V++EPHRH GVFI RGKEDALVTKNLVPG  VYGEKR
Sbjct: 72  RGRGGKRGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKR 122


>UniRef50_Q6AT27 Cluster: Putative fibrillarin protein; n=2; Oryza
           sativa|Rep: Putative fibrillarin protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 351

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 31/45 (68%), Positives = 37/45 (82%)
 Frame = +2

Query: 401 GGFKGGKQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKR 535
           GG KGG +V++ PH+H GVFIA+ KEDAL TKN+VPG  VYGEKR
Sbjct: 63  GGMKGGSKVVVVPHKHDGVFIAKAKEDALCTKNMVPGESVYGEKR 107


>UniRef50_UPI0000DD7D0A Cluster: PREDICTED: similar to fibrillarin;
           n=6; Eutheria|Rep: PREDICTED: similar to fibrillarin -
           Homo sapiens
          Length = 498

 Score = 65.7 bits (153), Expect = 1e-09
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = +2

Query: 410 KGGKQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKR 535
           KG   V +EPHRH GVFI RG EDALVT N+VPG  VYGE+R
Sbjct: 257 KGAMVVSVEPHRHEGVFIYRGAEDALVTLNMVPGQSVYGERR 298


>UniRef50_Q5A0V8 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 106

 Score = 56.4 bits (130), Expect = 9e-07
 Identities = 25/35 (71%), Positives = 26/35 (74%)
 Frame = -2

Query: 498 FLVTNASSLPLAMNTPGCLCGSIMTCFPPLKPPPA 394
           FLVTN SSLP AM TP CLCGS+ T  PPL PP A
Sbjct: 2   FLVTNKSSLPSAMKTPACLCGSMTTLAPPLAPPSA 36


>UniRef50_Q2PET2 Cluster: Putative fibrillarin homolog; n=1;
           Trifolium pratense|Rep: Putative fibrillarin homolog -
           Trifolium pratense (Red clover)
          Length = 475

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +2

Query: 419 KQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEK 532
           +QV++ PHR  G F A+GK++ L T+NLVPG  +YGEK
Sbjct: 237 EQVMVVPHRFEGFFNAKGKKNILCTRNLVPGEALYGEK 274


>UniRef50_Q3LWE7 Cluster: Nucleolar protein fibrillarin; n=1;
           Bigelowiella natans|Rep: Nucleolar protein fibrillarin -
           Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 253

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +2

Query: 410 KGGKQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGE 529
           K  K   IE HRH  V++ RG ED + T N+ PG    GE
Sbjct: 4   KQNKIFSIETHRHANVYVIRGIEDCIATINITPGKIFCGE 43


>UniRef50_Q9VG21 Cluster: CG10909-PA; n=2; Sophophora|Rep:
           CG10909-PA - Drosophila melanogaster (Fruit fly)
          Length = 349

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +2

Query: 431 IEPHRHPGVFIARGKEDA--LVTKNLVPGSEVYGEKR 535
           IEPHRH GV++ R + DA  L+T+N    ++ YGE+R
Sbjct: 114 IEPHRHYGVYLLRNRFDAIQLLTRNTSSSADDYGERR 150


>UniRef50_Q4QDL1 Cluster: Fibrillarin, putative; n=3;
           Leishmania|Rep: Fibrillarin, putative - Leishmania major
          Length = 297

 Score = 38.3 bits (85), Expect = 0.26
 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 401 GGFKGGKQVIIEPH-RHPGVFIARGKEDALVTKNLVPGSEVYGEKR 535
           GG    K  I  PH R  G ++  GK D L T++LVPG  VY EKR
Sbjct: 52  GGAGAPKGNIFHPHARFNGCYLLAGK-DTLSTRSLVPGVSVYSEKR 96


>UniRef50_A5AT06 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 516

 Score = 36.7 bits (81), Expect = 0.79
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +2

Query: 461 IARGKEDALVTKNLVPGSEVYGEKR 535
           I+  KEDA VTKN+VPG  VY EK+
Sbjct: 143 ISYDKEDARVTKNMVPGKAVYNEKK 167


>UniRef50_Q74N89 Cluster: Fibrillarin-like rRNA/tRNA
           2'-O-methyltransferase; n=2; Archaea|Rep:
           Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase -
           Nanoarchaeum equitans
          Length = 232

 Score = 36.3 bits (80), Expect = 1.0
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +2

Query: 419 KQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEK 532
           K + ++PH+  GV+I   K   L+TKNLV G +VY E+
Sbjct: 5   KNIKVKPHKLEGVYIGNNK--FLLTKNLVKGQKVYTER 40


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 322,191,166
Number of Sequences: 1657284
Number of extensions: 4441910
Number of successful extensions: 10726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10721
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)