Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G21
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    73   3e-13
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   7.8  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 34/53 (64%), Positives = 39/53 (73%), Gaps = 4/53 (7%)
 Frame = +2

Query: 389 PRAG----GGFKGGKQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKR 535
           PR G    GG +GGK V++EPHR  GVFI +GKEDAL TKN+V G  VYGEKR
Sbjct: 101 PRGGRGGAGGMRGGKTVVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKR 153


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 534 LFSP*TSDPGTRFLVT-NASSLPLAMNTPGCLCGSIMTCFPPLKPPP 397
           +F+    D G   L T N + +P A+ T GC C S+  C  P   PP
Sbjct: 275 VFTALNLDSGCMNLDTQNINGVPTALIT-GCACNSMDKCIDPTVVPP 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,346,467
Number of Sequences: 27780
Number of extensions: 105253
Number of successful extensions: 283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)