Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G21
         (889 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri...    84   1e-16
At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide...    83   3e-16
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril...    73   3e-13
At5g55370.1 68418.m06899 long-chain-alcohol O-fatty-acyltransfer...    28   7.2  

>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
           fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
          Length = 320

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 37/49 (75%), Positives = 40/49 (81%)
 Frame = +2

Query: 389 PRAGGGFKGGKQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKR 535
           P   GG KGG +VI+EPHRH GVFIA+GKEDALVTKNLVPG  VY EKR
Sbjct: 68  PAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKR 116


>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
           identical to fibrillarin 1 GI:9965653 from [Arabidopsis
           thaliana]; C-terminus identical to SKP1 interacting
           partner 7 GI:10716959 from [Arabidopsis thaliana];
           contains Pfam domain PF01269: Fibrillarin
          Length = 308

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 36/45 (80%), Positives = 39/45 (86%)
 Frame = +2

Query: 401 GGFKGGKQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKR 535
           GG KGG +VI+EPHRH GVFIA+GKEDALVTKNLVPG  VY EKR
Sbjct: 61  GGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKR 105


>At5g52490.1 68418.m06512 fibrillarin, putative similar to
           fibrillarin from {Xenopus laevis} SP|P22232, {Mus
           musculus} SP|P35550, {Homo sapiens} SP|P22087
          Length = 292

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 30/45 (66%), Positives = 36/45 (80%)
 Frame = +2

Query: 401 GGFKGGKQVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKR 535
           GG KGG +V++ PHRH GVF+A+ K DALVTKNLVPG  +Y EKR
Sbjct: 51  GGIKGGSKVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKR 95


>At5g55370.1 68418.m06899 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase similarity to wax synthase
           wax synthase - Simmondsia chinensis, PID:g5020219
           similar to wax synthase [gi:5020219] from Simmondsia
           chinensis
          Length = 343

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 47  IFRKRYRGGIAPLAFLSLITLKLYL 121
           ++R  Y  G++  AFL+L T+ +YL
Sbjct: 136 VYRNNYDSGLSRFAFLALFTIHVYL 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,971,104
Number of Sequences: 28952
Number of extensions: 97293
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)