Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G20
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.62 
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    29   0.62 
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   1.4  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   3.3  
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...    27   4.4  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   5.8  
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    26   7.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   7.7  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 21/52 (40%), Positives = 22/52 (42%)
 Frame = -3

Query: 549 VPSAPSQQQPHLMHLCF*LDLDSHFVLPAPDPPHCQRVDCTETRSLLVFSFP 394
           VPS  S      MH     D     + PAPD PH   V C E     VFSFP
Sbjct: 181 VPSTKSSTSSE-MHTQLLKDEQKKILTPAPDVPH--DVYCIEPSLGRVFSFP 229


>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 174 EDTVDEKRDALEDILSEIVKKDISI 248
           +DT+D   D  ED+L E+ KKD  I
Sbjct: 52  DDTLDVLNDTFEDLLEEVGKKDYDI 76


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 339 WQVCYRHLLQVVQPLFSVDIPP-TSQVFLVRVS 244
           +Q C+R  +  +  ++++  PP TS V +VR+S
Sbjct: 12  FQACFRRFVHQIPTIYALSTPPGTSAVAIVRIS 44


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +3

Query: 216 LSEIVKKDISIHVQEILEKWEECQPKKE--AAQPATDVDSKLAKLLE--SQT 359
           L  +VKKD   + +E L++W   +  +E     P++D+ S+   L++  SQT
Sbjct: 17  LQHLVKKDPKSYREEFLQQWNHYETAREIFLVNPSSDI-SEFCSLIDFISQT 67


>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 741 QDITLHGSSIIKKCFRFILNIY 676
           +DITL G   +KKC R  L  Y
Sbjct: 13  KDITLRGLETVKKCQRIYLEAY 34


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +1

Query: 364 PLQLDENTQTRKRKYE----KRSCLSTVNSL 444
           P +LD NTQ ++++YE    K   L  V+SL
Sbjct: 380 PYELDSNTQRKRKRYEDSLKKSKTLDKVDSL 410


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 317 CCRLCSLFFRLTFLPLLKYFLYVYRDVF 234
           CCR  S     T   LLKY+L +YR  F
Sbjct: 67  CCRSGSAADTQTVADLLKYYLSMYRIQF 94


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +1

Query: 244  RYTYKKYLRSGRNVNRKKRLHNLQQMSIANLPNFSNPRHWPLQLDENTQTRKRKYEKRSC 423
            RY Y+K   S  + N++ R+ ++   + + LPN   P  +    +  + TR  +Y   + 
Sbjct: 1280 RYDYEKRQWSTLSTNKRVRILDVSVNNRSELPNM--PSKFVAYTNMMSSTRASEYVNETT 1337

Query: 424  LSTVNSL 444
            + T+  L
Sbjct: 1338 MVTLRQL 1344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,400
Number of Sequences: 5004
Number of extensions: 54360
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)