Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G20
         (842 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51236| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_40433| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_25961| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_16983| Best HMM Match : SNARE (HMM E-Value=1.9)                     29   3.6  
SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)                  29   4.7  
SB_54868| Best HMM Match : Rhabdo_NV (HMM E-Value=1.1)                 29   4.7  
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_59127| Best HMM Match : ATP-synt_F6 (HMM E-Value=2.7)               29   6.2  
SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)                28   8.2  

>SB_51236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 86  FDLWLIDKLRSLKTDESVFGSYIS 157
           F+ WL  KL ++  DE VFGSY++
Sbjct: 15  FEGWLCSKLSAIGLDEDVFGSYVT 38


>SB_40433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 86  FDLWLIDKLRSLKTDESVFGSYIS 157
           F+ WL  KL ++  DE VFGSY++
Sbjct: 15  FEGWLCSKLSAIGLDEDVFGSYVT 38


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/67 (23%), Positives = 35/67 (52%)
 Frame = +3

Query: 213  ILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTRREYTD 392
            +L E V KD+ +  +    K E  + KK+  +   +VD    K+ E++     T+++  +
Sbjct: 1278 LLKEWVDKDLDLSKEVNETKKEVQETKKDVQETKKEVDETKTKVDETKKEVQETKKDVQE 1337

Query: 393  EEKKIRE 413
             +K+++E
Sbjct: 1338 TKKEVQE 1344


>SB_25961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 735 YPDXKLMIVFFH-KYYQLXGFMYVYSCCFSNVMSAVL 842
           Y D ++ I   H + Y+L  F+++ SCC +  +SA+L
Sbjct: 136 YSDGEISICMEHMRRYKLFKFVHIRSCCGTEAISAIL 172


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +3

Query: 228  VKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTRRE 383
            VKK++  +V    E  EEC+P+K+ A+     D  LAK+ +  T AT  +++
Sbjct: 1722 VKKNLE-NVTLAFESLEECEPQKKDAEKC--ADDLLAKMDDDSTDATVLKQQ 1770


>SB_16983| Best HMM Match : SNARE (HMM E-Value=1.9)
          Length = 101

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 237 DISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTR-REYTDEEKKIRE 413
           D+++  QE+L++  + + K + A+   +V  K  + LE Q   TTT   +  +     +E
Sbjct: 24  DLTLRYQEVLKERRDLENKLDQAESDLEVKHKRVEELERQKSETTTEFLQAYNFANTAKE 83

Query: 414 AILSQYSQL 440
           +++ Q  +L
Sbjct: 84  SVVQQLQRL 92


>SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)
          Length = 413

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +3

Query: 177 DTVDEKRDALEDILSEIVKKDISIH--VQEILEKWEECQPKKE 299
           DT+++  D LED ++ + + D  +H   Q+ LEK  EC  +++
Sbjct: 344 DTLEDDDDPLEDTVTVLKEHDTQLHRLSQDELEKQVECAKREK 386


>SB_54868| Best HMM Match : Rhabdo_NV (HMM E-Value=1.1)
          Length = 775

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 132 SSVFSDLNLSINHKSNLLAAXRLSI 58
           +++F+D+N+SI H +NL A   +SI
Sbjct: 256 TNLFADINISIGHGTNLFADINISI 280



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 132 SSVFSDLNLSINHKSNLLAAXRLSI 58
           +++F+D+N+SI H +NL A   +SI
Sbjct: 368 TNLFADINISIGHGTNLFADINISI 392



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 132 SSVFSDLNLSINHKSNLLAAXRLSI 58
           +++F+D+N+SI H +NL A   +SI
Sbjct: 424 TNLFADINISIGHGTNLFADINISI 448



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 132 SSVFSDLNLSINHKSNLLAAXRLSI 58
           +++F+D+N+SI H +NL A   +SI
Sbjct: 480 TNLFADINISIGHGTNLFADINISI 504


>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = +3

Query: 213 ILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTRREYTD 392
           +L+E V KD+ +  +    K E  + KK+  +   +V     K+ E++     T+++  +
Sbjct: 191 LLNEWVDKDLDLSKEVNETKKEVQETKKDVQETKKEVHETKTKVDETKKEVQETKKDVQE 250

Query: 393 EEKKIRE 413
            +K+++E
Sbjct: 251 TKKEVQE 257


>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = +3

Query: 213 ILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTRREYTD 392
           +L+E V KD+ +  +    K E  + KK+  +   +V     K+ E++     T+++  +
Sbjct: 184 LLNEWVDKDLDLSKEVNETKKEVQETKKDVQETKKEVHETKTKVDETKREVQETKKDVQE 243

Query: 393 EEKKIRE 413
            +K+++E
Sbjct: 244 TKKEVQE 250


>SB_59127| Best HMM Match : ATP-synt_F6 (HMM E-Value=2.7)
          Length = 479

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 274 GRNVNRKKRLHNLQQMSIANLPNFSNPRHWPLQLDEN 384
           G++  +  RL N  + ++   P  SNPR++ L+LD++
Sbjct: 346 GKSTYQMVRLQNPTEEALVLTPYISNPRNFRLELDQS 382


>SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)
          Length = 803

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = +3

Query: 156 LGILEGEDTVDEKRDALEDILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSK 332
           +GIL G  +  +K + LED   ++ KKD++  ++ +L++ E  +  +  A+ A   D+K
Sbjct: 26  MGIL-GRTSEKDKMNKLEDKYKDLYKKDLNEELKSVLDE-EIMKALESLAEEAAMKDAK 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,351,520
Number of Sequences: 59808
Number of extensions: 380016
Number of successful extensions: 1460
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)