Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G20
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   8.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 533 EGAEGTSTFRC 565
           EG  G STFRC
Sbjct: 41  EGLAGASTFRC 51


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +3

Query: 189 EKRDALEDILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLE 350
           E  DA+ +I+SEI++  I     +  ++  E   +    Q   D+  K A +++
Sbjct: 273 ESEDAIYNIISEIIETTIQEKRDDAKDESVEAIFQSILRQKNLDIRDKKAAIVD 326


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 363 PVSGIREVWQVCYRHLLQVVQ 301
           P SGI ++ Q+  +H+L   Q
Sbjct: 67  PASGIHQMQQLLQQHILSPTQ 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,381
Number of Sequences: 438
Number of extensions: 3820
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)