Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G20
(842 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g29750.1 68416.m03756 hypothetical protein 33 0.31
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 32 0.55
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c... 31 1.3
At5g01380.1 68418.m00051 expressed protein 30 2.2
At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase) domai... 30 2.2
At1g13330.1 68414.m01547 expressed protein similar to nuclear re... 30 2.2
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do... 29 2.9
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 29 3.9
At5g55600.1 68418.m06932 agenet domain-containing protein / brom... 29 3.9
At3g63500.2 68416.m07153 expressed protein 29 3.9
At3g63500.1 68416.m07152 expressed protein 29 3.9
At5g66230.1 68418.m08343 expressed protein 29 5.1
At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative simila... 29 5.1
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ... 29 5.1
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c... 28 6.8
At2g42800.1 68415.m05299 leucine-rich repeat family protein cont... 28 6.8
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 28 6.8
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 28 6.8
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 28 6.8
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ... 28 8.9
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ... 28 8.9
At4g25420.1 68417.m03656 gibberellin 20-oxidase identical to GI:... 28 8.9
At1g04890.1 68414.m00486 hypothetical protein contains Pfam prof... 28 8.9
>At3g29750.1 68416.m03756 hypothetical protein
Length = 421
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 213 ILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDV 323
++ E K+ +HV+E+++KWE KK AA +T+V
Sbjct: 373 LMIEFGKEVTQMHVEEMVDKWESSVKKKVAAVGSTEV 409
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 QEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTRREYTDEEKKIR-EAILSQY 431
+E+ ++++ + K E+ + D+D+ +AKL++ + A R Y KK+ EA+ ++
Sbjct: 677 RELESRYQQRKTKLESLEQEEDMDASVAKLIDQASRANADRYTYAINLKKLLVEAVAHKW 736
Query: 432 S 434
S
Sbjct: 737 S 737
>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 705
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 232 KKTSRY-TYKKYLRSGRNVNRKKRLHNLQQMSIANLPNFSNPRHW 363
K S Y ++ Y+R +V K R+ + + +IAN+P R+W
Sbjct: 336 KSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYW 380
>At5g01380.1 68418.m00051 expressed protein
Length = 323
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/77 (25%), Positives = 43/77 (55%)
Frame = +3
Query: 198 DALEDILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTR 377
+ L+DIL E +++ + + +E + WE + ++E + + ++A+L E + AT R
Sbjct: 225 NTLKDILEEFMRQTVKME-KEWRDAWEMKEIEREKREK--EWRRRMAEL-EEERAATERR 280
Query: 378 REYTDEEKKIREAILSQ 428
+EE+++RE +Q
Sbjct: 281 WMEREEERRLREEARAQ 297
>At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase)
domain-containing protein similar to BRCA1-associated
protein 2 [Homo sapiens] GI:3252872; contains Pfam
profile PF02148: Zn-finger in ubiquitin-hydrolases and
other protein
Length = 488
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 174 EDTVDEKRDALEDILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAK 341
E + E R E ++E V++ + +QE+ K E+C+ +K T+V++KL K
Sbjct: 351 ESLIVEARSKQESSIAEAVEQIVVNTMQELQNKIEKCEEEKSG---ITEVNTKLIK 403
>At1g13330.1 68414.m01547 expressed protein similar to nuclear
receptor coactivator GT198 (GI:16506273) {Rattus
norvegicus}; similar to TBP-1 interacting protein
(GI:7328534) [Homo sapiens]
Length = 226
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3
Query: 174 EDTVDEKRDALEDILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLES 353
++ + EK+ + D+ SEI ++ ++EI EK + + +KE +++ KL KL E
Sbjct: 92 QEQLQEKKKTISDVESEIKSLQSNLTLEEIQEK--DAKLRKE----VKEMEEKLVKLREG 145
Query: 354 QTL 362
TL
Sbjct: 146 ITL 148
>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 990
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 600 PYLLCPFLSSSEHLNVLVPSAPSQQQPHLMHLCF*LDLDSHFVLPAPDPPH 448
P+LL P SS ++LN++ + PS + + C+ H LP P PPH
Sbjct: 40 PFLLHP--SSHQNLNLVASNLPSSY--YYYYYCYFYS-QFHNSLPPPPPPH 85
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 229 LKKTSRYTYKKYLRSGRNVNRKKRLHNLQQMSIANLP---NFSNPRHWPLQLDENTQTRK 399
LK++++ YK Y+ SG + + K + N+ Q+++ + FS+P L++D K
Sbjct: 550 LKESAKEAYKTYI-SGYDSHSMKDVFNVHQLNLTEVATSFGFSDPPKVALKIDRGGYRSK 608
Query: 400 RK 405
R+
Sbjct: 609 RE 610
>At5g55600.1 68418.m06932 agenet domain-containing protein /
bromo-adjacent homology (BAH) domain-containing protein
contains Pfam profile PF01426: BAH domain and PF05641:
Agenet domain
Length = 663
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +3
Query: 207 EDILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTRREY 386
E++ +++KDI I + + W + PK E + S +KL TL+ T+ +
Sbjct: 505 ENLCLTVLRKDIRISRDWVGDSWVDIDPKPEILAIVSSDSSSESKLSMLSTLSKDTKAKP 564
Query: 387 TDEEKKIREA 416
+ + EA
Sbjct: 565 SAMPNIVEEA 574
>At3g63500.2 68416.m07153 expressed protein
Length = 1162
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 177 DTVDEKRDALEDILSEI--VKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLE 350
DTVDEK D ED + VK + +++ ++ E+ EE + K A + + + +E
Sbjct: 336 DTVDEKGDKDEDYKENLHGVKLEETLY-PDVPERLEELKEVKGNDGDANKAEVEGPECVE 394
Query: 351 SQTLATTTRREY 386
LA T EY
Sbjct: 395 ENALANRTPAEY 406
>At3g63500.1 68416.m07152 expressed protein
Length = 887
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 177 DTVDEKRDALEDILSEI--VKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLE 350
DTVDEK D ED + VK + +++ ++ E+ EE + K A + + + +E
Sbjct: 61 DTVDEKGDKDEDYKENLHGVKLEETLY-PDVPERLEELKEVKGNDGDANKAEVEGPECVE 119
Query: 351 SQTLATTTRREY 386
LA T EY
Sbjct: 120 ENALANRTPAEY 131
>At5g66230.1 68418.m08343 expressed protein
Length = 329
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 186 DEKRDALEDILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLA 365
DEK ++LE S + + + + + E WE Q D +S + + Q A
Sbjct: 173 DEKEESLELEKSPSITRSLLLDFSDKSELWESSDCSSVVTQNPEDDNSSVWSM---QANA 229
Query: 366 TTTRREYTDEEKK 404
+ EY DEE++
Sbjct: 230 SAKDEEYDDEEEE 242
>At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative similar
to gibberellin 20-oxidase GI:1109695, GI:9791186
Length = 378
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -1
Query: 350 FEKFGKFAIDICCRLCSLFFRLTFLPLLKYFLYVYRDVFFNYLRQN 213
FE+FGK D C + SL L + LL L V RD F + +N
Sbjct: 178 FEQFGKVYQDYCEAMSSL--SLKIMELLGLSLGVNRDYFRGFFEEN 221
>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 561
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 323 DICCRLCSLFFRLTFLPLLKYFLYVY 246
D C LCS+FFR + L FL+ +
Sbjct: 15 DSCIHLCSVFFRFLYYTLPALFLFFF 40
>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 673
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 262 YLRSGRNVNRKKRLHNLQQMSIANLPNFSNPRHW 363
Y+R +V K R+ + + +IAN+P R W
Sbjct: 334 YVRLEESVGNKDRIREIYERAIANVPPAQEKRFW 367
>At2g42800.1 68415.m05299 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; and grail
Length = 462
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 777 NTCGKKLSSIYXQDITLHGSSIIKKCFRFILNIYFATSSFPLSVF 643
+ CGK +SS +++H S + R+ + +FA + FP ++F
Sbjct: 411 DVCGKNVSS--GGGLSVHSSKKKSQASRYYRSCFFANALFPFALF 453
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 TYKKYLRSGRNVNRKKRLHNLQQMSIANLPN-FSNPRHWPLQLDENTQTRKRKY 408
TY + + + NR+ R+ L + +++ +PN + + + PL D + Q R Y
Sbjct: 451 TYPPMVANAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTY 504
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 234 KDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTRREYTDEEKKIRE 413
+DI H +++ E E +KEA T + SK ++ E L+ RR+ +E+ + +
Sbjct: 310 QDIDCHSEDVEE--ESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQ 367
Query: 414 AIL 422
++
Sbjct: 368 ELI 370
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 234 KDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTLATTTRREYTDEEKKIRE 413
+DI H +++ E E +KEA T + SK ++ E L+ RR+ +E+ + +
Sbjct: 310 QDIDCHSEDVEE--ESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQ 367
Query: 414 AIL 422
++
Sbjct: 368 ELI 370
>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 222 QTEYLLERLSFHRRCLRLPKYQDI*DPN--TLSSVFSDLNLSINHKSNLLAAXRLSIKNQ 49
+TE L S RCL +PK I DP SS++ L + + ++ A R S K +
Sbjct: 366 ETESLGREKSKPERCLWVPKTLRIDDPEEAAKSSIWETLGIKKDENADTFGAFRSSTKEK 425
Query: 48 N 46
+
Sbjct: 426 S 426
>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 222 QTEYLLERLSFHRRCLRLPKYQDI*DPN--TLSSVFSDLNLSINHKSNLLAAXRLSIKNQ 49
+TE L S RCL +PK I DP SS++ L + + ++ A R S K +
Sbjct: 366 ETESLGREKSKPERCLWVPKTLRIDDPEEAAKSSIWETLGIKKDENADTFGAFRSSTKEK 425
Query: 48 N 46
+
Sbjct: 426 S 426
>At4g25420.1 68417.m03656 gibberellin 20-oxidase identical to
GI:1109695
Length = 377
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -1
Query: 371 CSGQCLGFEKFGKFAIDICCRLCSLFFRLTFLPLLKYFLYVYRDVFFNYLRQN 213
C GF+ FGK + C + SL L + LL L V RD F + +N
Sbjct: 173 CDALGHGFQPFGKVYQEYCEAMSSL--SLKIMELLGLSLGVKRDYFREFFEEN 223
>At1g04890.1 68414.m00486 hypothetical protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 494
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 462 PDPPHCQRVDCTETRSLLV 406
P+P H Q DC E R+LLV
Sbjct: 313 PEPEHKQNKDCQERRALLV 331
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,493,372
Number of Sequences: 28952
Number of extensions: 278427
Number of successful extensions: 944
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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