Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G19
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   242   5e-65
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   242   5e-65
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   242   5e-65
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...   129   4e-31
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.64 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   7.9  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  242 bits (592), Expect = 5e-65
 Identities = 118/127 (92%), Positives = 122/127 (96%)
 Frame = +2

Query: 164 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 343
           MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 344 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 523
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 524 MPKDIQL 544
            PKD+QL
Sbjct: 121 QPKDMQL 127


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  242 bits (592), Expect = 5e-65
 Identities = 118/127 (92%), Positives = 122/127 (96%)
 Frame = +2

Query: 164 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 343
           MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 344 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 523
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 524 MPKDIQL 544
            PKD+QL
Sbjct: 121 QPKDMQL 127


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  242 bits (592), Expect = 5e-65
 Identities = 118/127 (92%), Positives = 122/127 (96%)
 Frame = +2

Query: 164 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 343
           MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 344 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 523
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 524 MPKDIQL 544
            PKD+QL
Sbjct: 121 QPKDMQL 127


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score =  129 bits (312), Expect = 4e-31
 Identities = 70/112 (62%), Positives = 88/112 (78%), Gaps = 10/112 (8%)
 Frame = +2

Query: 239 ARKSAPATGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 400
           A+KS  A  G  + +P   RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F  
Sbjct: 2   AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61

Query: 401 --KTD--LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 544
              TD  LR+QS+A+  LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QL
Sbjct: 62  NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQL 113


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = +2

Query: 269 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRFQSSAVMA 439
           + + HR +    +L E + +++ S  LLI   P Q  +RE+A   DF    +F+    + 
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566

Query: 440 LQ---EASEAYLVGLFE 481
           L+   E  EAY+  L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 305 ALREIRRYQKSTELLIRKLPFQR 373
           A RE+++ ++  EL++  LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,496
Number of Sequences: 5004
Number of extensions: 49945
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)