Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G18
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    32   0.13 
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   1.6  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   3.6  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    27   4.8  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    26   6.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   8.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   8.3  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    26   8.3  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 307  MTLWTRAQQLPPECLQKVRMIYVDHFPIEVRHCLASWIE---SRIWTAEPEDQQRSFVNE 477
            M+L+    Q P E +  V M  +   PIEVRH + S  +   S I++ EPE ++     E
Sbjct: 1800 MSLFILRSQFPYELVNVVYMALLKSSPIEVRHLVKSSFDNIFSYIFSEEPESKKSPIWFE 1859

Query: 478  LVQEI 492
            L  ++
Sbjct: 1860 LPLQV 1864


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 322 RAQQLPPECLQKVRMIYVDHFPIEVRH 402
           ++Q+LPPE L+ + M+Y  H  I ++H
Sbjct: 381 QSQRLPPEQLKLIGMLYRKHLQIILQH 407


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +1

Query: 301 STMTLWTRAQQLPPECLQKVRMIYVDHFPIEVRHCLASWIESRIWTAEPEDQQRSFVNEL 480
           S+  LWT A  L P   +K R            H L + I   +W  +  D+ RS+  + 
Sbjct: 778 SSGLLWTEAIWLEPRAQRKTRATDALRKCEGNAHLLCT-IARMLWLEKKADKARSWFLKA 836

Query: 481 VQEIQTNADL 510
           V+  Q N D+
Sbjct: 837 VKADQDNGDV 846


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 232 IYKLD*IFSFRITEYFLAVSTMMATGYKINGTQYCFFLRATHFLI 98
           IY+++  ++F +TEY    + M +T   I G  Y  FL   +F+I
Sbjct: 293 IYEMNITYNFPVTEYKGTKTIMFSTTSVIGGKNY--FLGILYFVI 335


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 418 IESRIWTAEPEDQQRSFV 471
           I +R+WT+EPE QQ   +
Sbjct: 42  IGARLWTSEPESQQLGMI 59


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 523  DMFVTKMKLLEAAKNFHMQYSHAPQELYAYMRRCLALEMEVIQNAMGT-PYVAQPHTERK 699
            D+F T M + E   +      ++ QEL A +R+ L+  +E   +   T  Y    H    
Sbjct: 1671 DLFATAMHVYEVIMDDQQLLKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNI 1730

Query: 700  YSELI 714
            Y E I
Sbjct: 1731 YKETI 1735


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 570  PHAVQSRPPGVVRLHEALSRLRDGGHSERDG-HSVRGPASHREEVQRA 710
            P ++   PP    +H++ S+   G H   +G  S+RG    R +  R+
Sbjct: 1261 PFSLHQVPPPESLIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRS 1308


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/75 (18%), Positives = 35/75 (46%)
 Frame = +1

Query: 475 ELVQEIQTNADLMLSPDMFVTKMKLLEAAKNFHMQYSHAPQELYAYMRRCLALEMEVIQN 654
           +L+Q +Q +  +M   ++   ++  +E+ K    +  H P++ +       ++  + I N
Sbjct: 67  QLLQNLQRDMAIMKKKNIHGHRVGRVESDKTKEAERQHKPRKPFIPKNPKRSIYYDPIFN 126

Query: 655 AMGTPYVAQPHTERK 699
             G P    P+ E++
Sbjct: 127 PYGVPPPGMPYREKE 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,708,441
Number of Sequences: 5004
Number of extensions: 79515
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)