Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G18
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.53 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   8.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 549 PRSGE-ELPHAVQSRPPGVVRLHEALSRLRDGGHSERD 659
           P  GE +LP   Q  PP    +   ++ LRD  H   D
Sbjct: 285 PDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTD 322


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +2

Query: 797  SLQYHECLKKQRSHELPPAADGD 865
            SLQ H+C++++R+ +    +D +
Sbjct: 1644 SLQDHDCIRQERTQQRNVISDSE 1666


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 675  HVRSAHRVLNDLHL*GETTPHVSVQLLGGVT 583
            H R+AH  L++L L    T H    LL G T
Sbjct: 1440 HYRTAHGNLDELQLSRHATSHELKGLLCGNT 1470


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -3

Query: 451 PPAPR-SISCSRSKTPGNASLRSGNDPRISFVPFEGTQGVAAALASTASLWNY 296
           PPA   S     S+ P  ASL S     ++    EG +  A  L  T  + NY
Sbjct: 678 PPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNY 730


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 675  HVRSAHRVLNDLHL*GETTPHVSVQLLGGVT 583
            H R+AH  L++L L    T H    LL G T
Sbjct: 1436 HYRTAHGNLDELQLSRHATSHELKGLLCGNT 1466


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +2

Query: 737 RR*T*PARKSAASRPILNPXSLQYHECLKKQRSHELPPAADGDHRAPRP 883
           RR   P  +   +RPI  P     H  L+++   E  P  +     P+P
Sbjct: 61  RREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQP 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,940
Number of Sequences: 438
Number of extensions: 6375
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)