Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G18
(894 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 32 0.45
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 32 0.45
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.45
At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa... 32 0.59
At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative s... 31 1.4
At5g62260.1 68418.m07817 AT hook motif-containing protein contai... 30 1.8
At2g34620.1 68415.m04253 mitochondrial transcription termination... 30 1.8
At3g62560.1 68416.m07028 GTP-binding protein, putative similar t... 30 2.4
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 29 3.1
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 29 3.1
At5g47430.1 68418.m05844 expressed protein 28 9.6
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 28 9.6
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 28 9.6
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co... 28 9.6
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 32.3 bits (70), Expect = 0.45
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 4/145 (2%)
Frame = +3
Query: 351 SKGTNDIRGSFPDRSEALPGVLDREQDMDRGAGGPAAFVRQRTRPGDSDERRSDAVPGHV 530
S + +R P R + L R + R R S +R D++
Sbjct: 107 SYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKRMDDSLSPRA 166
Query: 531 RYEDEAPRSGEE-LPHAVQSRPPGVVRLHEALSRLRDGGHSERDG-HSVRGP-ASHREEV 701
R D +P +E P + PP +L + + RDGG + +G +SV P +
Sbjct: 167 R--DRSPVLDDEGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDS 224
Query: 702 QRADHGPADCKAE-GEHSRRGNPQP 773
+ D P D E S RG+ P
Sbjct: 225 SKEDRSPVDDDYEPNRTSPRGSESP 249
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 32.3 bits (70), Expect = 0.45
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 4/145 (2%)
Frame = +3
Query: 351 SKGTNDIRGSFPDRSEALPGVLDREQDMDRGAGGPAAFVRQRTRPGDSDERRSDAVPGHV 530
S + +R P R + L R + R R S +R D++
Sbjct: 118 SYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKRMDDSLSPRA 177
Query: 531 RYEDEAPRSGEE-LPHAVQSRPPGVVRLHEALSRLRDGGHSERDG-HSVRGP-ASHREEV 701
R D +P +E P + PP +L + + RDGG + +G +SV P +
Sbjct: 178 R--DRSPVLDDEGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDS 235
Query: 702 QRADHGPADCKAE-GEHSRRGNPQP 773
+ D P D E S RG+ P
Sbjct: 236 SKEDRSPVDDDYEPNRTSPRGSESP 260
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 32.3 bits (70), Expect = 0.45
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 4/145 (2%)
Frame = +3
Query: 351 SKGTNDIRGSFPDRSEALPGVLDREQDMDRGAGGPAAFVRQRTRPGDSDERRSDAVPGHV 530
S + +R P R + L R + R R S +R D++
Sbjct: 148 SYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKRMDDSLSPRA 207
Query: 531 RYEDEAPRSGEE-LPHAVQSRPPGVVRLHEALSRLRDGGHSERDG-HSVRGP-ASHREEV 701
R D +P +E P + PP +L + + RDGG + +G +SV P +
Sbjct: 208 R--DRSPVLDDEGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDS 265
Query: 702 QRADHGPADCKAE-GEHSRRGNPQP 773
+ D P D E S RG+ P
Sbjct: 266 SKEDRSPVDDDYEPNRTSPRGSESP 290
>At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 zinc finger
protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 369
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 843 SSCDLC---FFKHSWYCKXQGFNIGLEAADFLAGYVHLLPYSLQARDQLAVLPLGVRLGH 673
S+C LC F + FN G A D G V + P A +++ VRLG
Sbjct: 180 STCPLCRGTLFSLGHQFEYPDFNFGFFAGDDGGGGVRVSPVQKPAENEIGKRVFSVRLGK 239
Query: 672 VRSAHRVLN 646
RS++ V N
Sbjct: 240 FRSSNIVNN 248
>At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative
similar to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 357
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Frame = +3
Query: 441 GAGGPAAFVRQRTRPGDSDERRSDAVPGHVR-YEDEAPRSGEELPHAVQSRPPGVVRLHE 617
G GG F R R G + + R++ PG+ + R E+ A + G R+
Sbjct: 67 GTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRRPSEDADGASRGGSVGGYRVGG 126
Query: 618 ALSRLRDGGHSERDGHSVRGPASHREEVQRADHG 719
R GG + + V P + + R HG
Sbjct: 127 GREGPRRGGVANGESGDVERPPRNYDRHSRTGHG 160
>At5g62260.1 68418.m07817 AT hook motif-containing protein contains
Pfam PF03479: Domain of unknown function (DUF296);
contains Pfam PF02178: AT hook motif; similar to AT-Hook
DNA-Binding Protein SAP1 protein (GI:4165183)
[Antirrhinum majus]; similar to AT-hook protein 2,
Arabidopsis thaliana, EMBL:ATAJ4119
Length = 441
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 451 PPAPRSISCSRSKTPGNASLRSGNDP 374
PPAP S + TPG+A+ +G+DP
Sbjct: 49 PPAPSSAPVPTTVTPGSATASTGSDP 74
>At2g34620.1 68415.m04253 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 303
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -2
Query: 137 PVLFFFKSNAFSNFQ*EL*TPYVLSEYENKLANLKEFP 24
P LF F +NF+ +L Y +SE + KL NLKEFP
Sbjct: 219 PALFTFSIE--NNFKPKL--DYFMSEIKGKLENLKEFP 252
>At3g62560.1 68416.m07028 GTP-binding protein, putative similar to
GTP-binding protein SAR1A (SP:O04834) [Arabidopsis
thaliana]; small GTP-binding protein Bsar1a - Brassica
campestris, EMBL:U55035
Length = 193
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 643 VIQNAMGTPYVAQPHTERKYSELITGLQTVRQKVNIAGEEIRSLQ 777
++ N + PY A E +Y +T T + KVN+AG +R L+
Sbjct: 126 ILGNKIDIPYAAS-EDELRYHLGLTSFTTGKGKVNLAGTNVRPLE 169
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 29.5 bits (63), Expect = 3.1
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +3
Query: 450 GPAAFVRQRTRPGDSDERRSDAVPGH-VRYEDEAPRSGEELPHAVQSRPPGVVRLHEALS 626
G F +R+ ++ ++ G VR D R G P + +P G +
Sbjct: 50 GFVTFSNRRSADDAIEDMDGKSIGGRAVRVNDVTTRGGRMNPGPGRLQPHG--GWDRSPD 107
Query: 627 RLRDGGHSERDGHSVRGPASHREEVQRADHGPADCKAEGEHS 752
R DG + ERD +S R R + +R DH + + EHS
Sbjct: 108 RRSDGNY-ERDRYSDRSRERDRSQDRRKDHRYIEKERAYEHS 148
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = +1
Query: 553 EAAKNFHMQYSHAPQELYAYMRRCLALEMEVIQNAMGTPYVAQPHTERKYSELITGLQTV 732
EAA M+ + P L R + LEME + T ++ R +EL+ L+
Sbjct: 472 EAAAKLKMEITSKPTALDELDRSVIKLEMERLSLTNDTDKASRERLNRIETELVL-LKEK 530
Query: 733 RQKVNIAGEEIRSLQANIESLXFAVPRV 816
+ ++ E RS+ + ++S+ + RV
Sbjct: 531 QAELTEQWEHERSVMSRLQSIKEEIDRV 558
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = +3
Query: 390 RSEALPGVLDREQDMDRGAGGPAAFVRQRTRPGDSDERRSDAVPGHVRYEDEAPRSGEEL 569
+SE P DR++D +R RTR D R D H + E RS
Sbjct: 693 KSERYPDERDRQRDRERSRHQDVDREHDRTR----DRRDEDRSRDHRHHRGETERSQHH- 747
Query: 570 PHAVQSRPP 596
H +S PP
Sbjct: 748 -HRKRSEPP 755
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 372 RGSFPDRSEALPGVLDREQ---DMDRGAGGPAAFVRQRTRPGDSDERRS 509
R P+R P RE+ D RGA AA+ ++RT P D RRS
Sbjct: 142 RDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSP-DYGRRRS 189
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 372 RGSFPDRSEALPGVLDREQ---DMDRGAGGPAAFVRQRTRPGDSDERRS 509
R P+R P RE+ D RGA AA+ ++RT P D RRS
Sbjct: 183 RDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSP-DYGRRRS 230
>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
contains Pfam profile PF00566: TBC domain
Length = 771
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 489 DSDERRSDAVPGHVRYEDEAPRSGEELPHAVQ 584
++D+ SD PG+ R EDE P + E+ H VQ
Sbjct: 93 NADKPGSDLTPGNAREEDEVP-NREKNVHKVQ 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,800,334
Number of Sequences: 28952
Number of extensions: 432311
Number of successful extensions: 1247
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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