Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G17
(929 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 38 0.002
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 36 0.006
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 31 0.23
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 27 2.8
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 3.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 6.6
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 8.7
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc... 26 8.7
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 37.9 bits (84), Expect = 0.002
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Frame = +1
Query: 247 RGEGLNKFEPFEDPLKSELETGKFTILPTRDATGAAIAVFTANKHFPSQTTHQTTLQGVV 426
RGE K E +D +L TGK T+L RD + I + H PS+ T + + V
Sbjct: 119 RGELYAK-ETNDDQFLEQLRTGKVTMLG-RDLSDRPICYIQVHLHQPSKLTQNSLREMTV 176
Query: 427 YQLDVALQSLETQRA---------GLVFIYDMTDSKYTNFDYELSQKILTMLKGGYPAKL 579
+ ++ L Q+ + ++D+++ N DY + + + L+ YP L
Sbjct: 177 WVMETMRLFLRPQKTLKDSMDSPQNVNVLFDLSNFSLHNMDYSFVKYLASCLEYYYPQSL 236
Query: 580 KKVLIVTAPLWFK 618
++ +P F+
Sbjct: 237 GVCILHKSPWIFR 249
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 36.3 bits (80), Expect = 0.006
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Frame = +1
Query: 172 IKFLLARKFDVGRAHAL------WRQHEATRRGEGLNKFEPFE--DPLKSELETGKFTIL 327
++FL ARK++V A + WR E GE + + + D +L GK I
Sbjct: 128 LRFLRARKWNVEAALEMFMKTVHWRSREMNV-GEIVCNADHLDKDDDFVRQLRIGKCFIF 186
Query: 328 PTRDATGAAIAVFTANKHFPSQTTHQTTLQGVVYQLDVALQSLETQRAGLVFIYDMTDSK 507
D + A H + ++ + V+ ++ A L+ ++DMTD
Sbjct: 187 G-EDKHNRPVCYIRARLHKVGDVSPESVERLTVWVMETARLILKPPIETATVVFDMTDFS 245
Query: 508 YTNFDYELSQKILTMLKGGYPAKLKKVLIVTAPLWFK 618
+N DY + ++ + YP L + ++ AP F+
Sbjct: 246 MSNMDYGPLKFMIKCFEAHYPECLGECIVHKAPWLFQ 282
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 31.1 bits (67), Expect = 0.23
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 6/150 (4%)
Frame = +1
Query: 166 TAIKFLLARKFDVGRAHALWRQHEATRRGEGLNKFEPF-EDPLKSELETGKFTILPTRDA 342
T ++FL ARKF V + + R+ L E+ L + +D
Sbjct: 54 TLLRFLKARKFVVTDSSDMLANAIVWRQQANLRSIMVRGENGLNQNFVKASMYFIWGQDK 113
Query: 343 TGAAIAVFTANKHFPSQTTHQTT-LQGVV-YQLDVA---LQSLETQRAGLVFIYDMTDSK 507
G AI + P + T L+ ++ Y ++ A L S + G++ + D+T
Sbjct: 114 KGRAIVFLNLHNFIPPKNTKDMEELKALILYAMENARLFLDSEQNAAKGVLGLVDLTYFS 173
Query: 508 YTNFDYELSQKILTMLKGGYPAKLKKVLIV 597
N D + ++ + YP L + LIV
Sbjct: 174 RKNIDLDFARVFAETFQNYYPEILGQALIV 203
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 427 YQLDVAL---QSLETQRAGLVFIYDMTDSKYTNF-DYELSQKILTMLKGGYPAKLKKVLI 594
Y+L AL QSL ++ F+ Y DYE S+++ L+ P+++K + +
Sbjct: 343 YKLREALNCFQSLPIEQQNTPFVLAKLGITYFELVDYEKSEEVFQKLRDLSPSRVKDMEV 402
Query: 595 VTAPLW 612
+ LW
Sbjct: 403 FSTALW 408
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 641 TEVSGRETLNQSGAVTINTFFNLAG*PPFNIVNIFCDSS*SKLV 510
T + L+Q +TI++ LAG P+NI+ D++ +K V
Sbjct: 223 TFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNV 266
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 129 AQRDWCGVCITSDGDQVLVGAQVRCWEGPRALEAA 233
A+ D + I ++GD V+V V WE ++ +AA
Sbjct: 230 AEGDAANIMINAEGDYVVVQPDVASWETYQSRKAA 264
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 90 PEQELATKTFLERAQRDWCGVCI 158
P+++ T ER QRDW VC+
Sbjct: 444 PQEDDQPMTQHERDQRDWSAVCL 466
>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = +3
Query: 423 GVPVGRGLTIAGDSASRPGLHLRHDRLQIHQLRLRAVAENIDYVKGWLSGQIEEGINSDG 602
G+P+GRGL + + +S+ L + L ++ D+ G+++G+ + SD
Sbjct: 139 GLPLGRGLLLLAEMSSKGSLATG----SYTEKTLEWFEKHTDFCFGFIAGRRFPNLQSDY 194
Query: 603 AALVQGLPSGYFGCSLERSY 662
+ G+ G L + Y
Sbjct: 195 ITMSPGIGLDVKGDGLGQQY 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,745
Number of Sequences: 5004
Number of extensions: 68364
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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