Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G17
(929 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17620| Best HMM Match : CRAL_TRIO (HMM E-Value=9.2) 58 1e-08
SB_20711| Best HMM Match : Mod_r (HMM E-Value=2.3) 53 4e-07
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072) 51 1e-06
SB_3466| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_28913| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_45894| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 30 3.1
SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3) 29 4.1
SB_17358| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.2e-07) 29 4.1
SB_59370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07) 29 5.4
SB_8435| Best HMM Match : PX (HMM E-Value=2.8) 29 7.1
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 7.1
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19) 28 9.4
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 28 9.4
SB_10811| Best HMM Match : Ras (HMM E-Value=0) 28 9.4
>SB_17620| Best HMM Match : CRAL_TRIO (HMM E-Value=9.2)
Length = 254
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/78 (34%), Positives = 44/78 (56%)
Frame = +1
Query: 328 PTRDATGAAIAVFTANKHFPSQTTHQTTLQGVVYQLDVALQSLETQRAGLVFIYDMTDSK 507
P RD T + + + H P + T +Q + +QLD A S TQ+ G+ I DM+DS
Sbjct: 1 PIRDETEPTVVLVNVSLHDPGTSDPVTAIQAISFQLDEATLSPITQKNGIEIIMDMSDSA 60
Query: 508 YTNFDYELSQKILTMLKG 561
+ N D +LS++ L +++G
Sbjct: 61 FANIDMDLSRRSLDIMQG 78
>SB_20711| Best HMM Match : Mod_r (HMM E-Value=2.3)
Length = 185
Score = 52.8 bits (121), Expect = 4e-07
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = +1
Query: 460 TQRAGLVFIYDMTDSKYTNFDYELSQKILTMLK 558
TQR+GLV +YDM++S Y NFD++LSQKIL +LK
Sbjct: 4 TQRSGLVLLYDMSNSSYKNFDFDLSQKILELLK 36
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 681 VSAPQLGAHVPRSILPXQLGGLHDTDHTTWLEYC 782
+S QL +P +P LGG + DH +WL C
Sbjct: 57 LSIEQLQDRLPIGTIPKSLGGKLNVDHFSWLNQC 90
>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
Length = 2374
Score = 51.2 bits (117), Expect = 1e-06
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 121 LNELSET-GAGCVSRATAIKFLLARKFDVGRAHALWRQHEATRRGEGLNKFEPFEDPLKS 297
+N+ E+ G V ATAIK+LLAR +D +A L+ R+ L+ F P ++
Sbjct: 2305 VNDARESLGLSPVGTATAIKYLLARNYDAPKAVELYHDSMRLRKTYDLDTFSPHRKSVQK 2364
Query: 298 ELETGKFTIL 327
EL +GKFTIL
Sbjct: 2365 ELSSGKFTIL 2374
>SB_3466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 124 NELSETGAGCVSRATAIKFLLARKFDVGRAHALWRQH 234
NE SE G V TA+KFL ARKFD+ RA L++ +
Sbjct: 11 NERSEFGLSPVGTTTAVKFLTARKFDIDRALLLYKSY 47
>SB_28913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 124 NELSETGAGCVSRATAIKFLLARKFDVGRAHALWRQH 234
NE SE G V TA+KFL ARKFD+ RA L++ +
Sbjct: 24 NERSEFGLSPVGTTTAVKFLTARKFDIDRALLLYKSY 60
>SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 30.7 bits (66), Expect = 1.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 185 NKNLIAVARDTHPAPVSLSSFKKCFCRQ 102
NK ++A + T AP SL++ K C CRQ
Sbjct: 201 NKRIVASSITTEDAPTSLANNKTCNCRQ 228
>SB_45894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 263 TSLNRSRIHLSQNSKPANLLYCQPEMRPVLPLPCSQRTNTSPHRLRIKQH 412
+S +R R+ S++ PANLL +R V P Q+T S HR +K+H
Sbjct: 24 SSHDRDRL-ASRSLCPANLLVFDRVLRDVTPPKTLQQTLYSSHRDPVKRH 72
>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1261
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 263 TSLNRSRIHLSQNSKPANLLYCQPEMRPVLPLPCSQRTNTSPHRLRIKQH 412
+S +R R+ S++ PANLL +R V P Q+T S HR +K+H
Sbjct: 646 SSHDRDRL-ASRSLCPANLLVFDRVLRDVTPPKTLQQTLYSSHRDPVKRH 694
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 621 LPSGYFGCSLERSYGNACTRVSAPQLGAHVPRSILPXQLGGLHDT 755
LP G + + G R+ P LGA+ P +I+ Q+GG T
Sbjct: 480 LPPGVQATMITNAQGVPVMRLQGPGLGANSPLTIVTSQIGGTAGT 524
>SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3)
Length = 485
Score = 29.5 bits (63), Expect = 4.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 317 LLYCQPEMRPVLPLPCSQRTNTSPHR 394
++YC E +P P C RT+ PHR
Sbjct: 44 IIYCYAEPQPSTPNRCRLRTHVLPHR 69
>SB_17358| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.2e-07)
Length = 227
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 676 HGSARRNLARTCRDLSCPSNWVACTTLI 759
+G RRN ++ LSCP N C TL+
Sbjct: 64 YGGCRRNFPKSTPGLSCPRNSKECDTLM 91
>SB_59370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 708 VPRSILPXQLGGLHDTDHTTWLEYCKNS 791
+P + +P LGGL H WL C S
Sbjct: 33 LPLTSVPVSLGGLAHVQHQAWLHQCDES 60
>SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07)
Length = 766
Score = 29.1 bits (62), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 424 VYQLDVALQSLETQRAGLVFIYDMTDSKYTNFDYELSQKILTML 555
+++LD L+SL + ++ YD KY NF ++ ++I T L
Sbjct: 641 LFKLDSYLESLREEEHSIIAGYDSERDKYINFLWDEYEQIETRL 684
>SB_8435| Best HMM Match : PX (HMM E-Value=2.8)
Length = 277
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 447 TIAGDSASRPGLHLRHDRLQIHQLRLRAVAENI 545
T+ GD+ +R + +R D LQ + LRL +A+N+
Sbjct: 195 TLNGDNQNRQSMEVR-DMLQAYLLRLSEIADNV 226
>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1182
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 808 ECXXCXEFLQYSNQVV*SVSCKPPSCXGRIDRGTCAPSC 692
+C C + Y N +V SCKP SC ID C
Sbjct: 419 QCEECADGY-YGNPLVPGGSCKPCSCNNNIDPTVSGKGC 456
>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
Length = 648
Score = 28.3 bits (60), Expect = 9.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +3
Query: 633 YFGCSLERSYGNACTRVSAPQLGAHVPRSILPXQLGGLHDTDHTTWL 773
YFGC++ T S L + S L LGG DHT WL
Sbjct: 228 YFGCTVHARVVFT-TLTSLDGLAKFIEPSQLTASLGGTLKYDHTDWL 273
>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
Length = 454
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 343 TGAAIAVFTA--NKHFPSQTTHQTTLQGVVYQLDVALQSLETQRAGLVFIYDMTDSKYTN 516
TG A ++T P T++ + ++ DV ++S+ AGL Y TDSK
Sbjct: 261 TGQAFIMWTTPLGHSVPYDRTNRLYVFSNGFRHDVIIESVNRTDAGLYRCYGNTDSKAVR 320
Query: 517 FDYELSQKIL 546
+ E + +++
Sbjct: 321 LEVEYAPELI 330
>SB_10811| Best HMM Match : Ras (HMM E-Value=0)
Length = 304
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 653 EKLRERVHTGQRAATWRARAAIYPAXATGWLARH*SHHLVGI 778
++ RER QRA+ R + P+ T ++ + S H +G+
Sbjct: 89 QRQRERARERQRASRLRRKQQRQPSTTTAFVVKQDSSHTIGV 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,360,100
Number of Sequences: 59808
Number of extensions: 573497
Number of successful extensions: 1725
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -