Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G17
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97015-9|AAB52349.1|  343|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   6.3  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    28   8.3  

>U97015-9|AAB52349.1|  343|Caenorhabditis elegans Hypothetical
           protein F48C1.8 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 366 EHGNGSTGRISGWQYSKFAGF 304
           +HGNG  G  +GW Y  F GF
Sbjct: 71  DHGNGGGGGDNGWGYRPFTGF 91


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 238 PHAASRARGPSQHRTCAPTRT*SPSLVIHTPHQSR 134
           P A  R R PSQ ++ AP R  SPS     P + R
Sbjct: 434 PPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRR 468


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 244 RRGEGLNKFEPFEDPLKSELETGKFTILPTRDATGAAIAVFTANKHFPS 390
           RRG G+    P ++P + +    K+ I P+ D +    AVF   +H PS
Sbjct: 657 RRGHGVG---PLDEPARRQ---AKYVIQPSPDGSHRPKAVFRKERHAPS 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,680,974
Number of Sequences: 27780
Number of extensions: 412500
Number of successful extensions: 1101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)