Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G17
         (929 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative / phos...    51   1e-06
At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative              46   5e-05
At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative / phos...    34   0.12 
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative...    32   0.62 
At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative / phos...    32   0.62 
At3g23660.1 68416.m02975 transport protein, putative similar to ...    29   4.4  
At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /...    29   5.8  
At1g02800.1 68414.m00237 endo-1,4-beta-glucanase / cellulase (CE...    29   5.8  

>At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative contains
           Pfam PF00650 : CRAL/TRIO domain and PF03765 : CRAL/TRIO,
           N-terminus; similar to polyphosphoinositide binding
           protein Ssh2p GB:AAB94599 GI:2739046 from [Glycine max]
          Length = 255

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 42/147 (28%), Positives = 65/147 (44%)
 Frame = +1

Query: 175 KFLLARKFDVGRAHALWRQHEATRRGEGLNKFEPFEDPLKSELETGKFTILPTRDATGAA 354
           +FL AR  D+ +A  ++  +   +R   L K    E  + ++L   K   +   D  G  
Sbjct: 55  RFLRARDLDIEKASTMFLNYLTWKRSM-LPKGHIPEAEIANDLSHNKMC-MQGHDKMGRP 112

Query: 355 IAVFTANKHFPSQTTHQTTLQGVVYQLDVALQSLETQRAGLVFIYDMTDSKYTNFDYELS 534
           IAV   N+H PS+       + VVY L+     +   +   V I D+    Y+N D    
Sbjct: 113 IAVAIGNRHNPSKGNPDEFKRFVVYTLEKICARMPRGQEKFVAIGDLQGWGYSNCDIRGY 172

Query: 535 QKILTMLKGGYPAKLKKVLIVTAPLWF 615
              L+ L+  YP +L K+ IV AP  F
Sbjct: 173 LAALSTLQDCYPERLGKLYIVHAPYIF 199


>At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative
          Length = 268

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 29/113 (25%), Positives = 50/113 (44%)
 Frame = +1

Query: 280 EDPLKSELETGKFTILPTRDATGAAIAVFTANKHFPSQTTHQTTLQGVVYQLDVALQSLE 459
           ED +K+  +TGK  +    D  G  + +    KH P         +  V+ L+ AL  L 
Sbjct: 115 EDSIKAATDTGKAYVHGFLDVKGRPVVIVAPAKHIPGLLDPIEDEKLCVFLLEKALSKLP 174

Query: 460 TQRAGLVFIYDMTDSKYTNFDYELSQKILTMLKGGYPAKLKKVLIVTAPLWFK 618
             +  ++ I+D+      N D +    +  +    YP++L +VL V AP  F+
Sbjct: 175 AGQHKILGIFDLRGFGSQNADLKFLTFLFDVFYYYYPSRLDEVLFVDAPFIFQ 227


>At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative similar to
           SP:P24859 from [Kluyveromyces lactissimilar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
           CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
           N-terminus
          Length = 608

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 172 IKFLLARKFDVGRAHALWRQHEATRRGEGLNK-FEPFEDPLKSEL 303
           ++FL ARKFD+G+A  +W      RR  G +   E FE P   E+
Sbjct: 106 LRFLFARKFDLGKAKLMWTNMIQWRRDFGTDTILEDFEFPELDEV 150


>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
            microtubule-associated motor KIF4 , Mus musculus,
            PIR:A54803
          Length = 1294

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 757  SVSCKPPSCXGRIDRGTCAPSCG 689
            S SCK   C  R  +G+C PSCG
Sbjct: 1065 SSSCKTMKCQCRATKGSCGPSCG 1087


>At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative /
           phosphatidylinositol transfer-like protein, putative
           similar to phosphatidylinositol transfer-like protein
           III (GI:14486705) [Lotus japonicus]; contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminu
          Length = 612

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 172 IKFLLARKFDVGRAHALWRQHEATRRGEGLNK-FEPFE 282
           ++FL ARKFD+G+   +W      R+  G +  FE FE
Sbjct: 115 LRFLKARKFDIGKTKLMWSNMIKWRKDFGTDTIFEDFE 152


>At3g23660.1 68416.m02975 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 765

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 203 LGGPTRSGGSMRPRVEGRDSTSLNRSRIHLSQNSKPANLLY--CQPEMRPVLPLPCSQR 373
           LGG +R GGS  P+  G  S+ LNR  +  S+     N L    Q +  PV P   SQR
Sbjct: 208 LGGSSRRGGSKGPQ-NGFPSSGLNRFLLPASECEFTLNSLLDELQSDQWPVKPGHRSQR 265


>At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           GI:807956 from [Saccharomyces cerevisiae]similar to
           polyphosphoinositide binding protein Ssh2p (GI:2739046)
           {Glycine max}; contains Pfam PF00650 : CRAL/TRIO domain;
           contains Pfam PF03765 : CRAL/TRIO, N-terminus
          Length = 490

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 12/167 (7%)
 Frame = +1

Query: 157 SRATAIKFLLARKFDVGRAHALWRQHEATRRGEGLNKFEPFEDPLKSELETGKFTILPTR 336
           S    +KFL AR+F V  + A+ +     R+   ++  E  E+ L  +L+   F     R
Sbjct: 163 SDVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKID--ELVEEDLVDDLDKVVFMHGHDR 220

Query: 337 DATGAAIAVFTA-------NKHFPSQTTHQTTLQGVVYQLDVALQSLETQRAGLVFIYDM 495
           +       V+         NK F  +   +  L+  +  L+ +++ L+    G+  I+ +
Sbjct: 221 EGHPVCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRKLDFSSGGVSTIFQV 280

Query: 496 TDSKYTNF--DYEL---SQKILTMLKGGYPAKLKKVLIVTAPLWFKV 621
            D K +      EL   +++ + +L+  YP  + K   +  P W+ V
Sbjct: 281 NDMKNSPGLGKKELRSATKQAVELLQDNYPEFVFKQAFINVPWWYLV 327


>At1g02800.1 68414.m00237 endo-1,4-beta-glucanase / cellulase (CEL2)
           identical to endo-1,4-beta glucanase; ATCEL2 GI:3132891
           from [Arabidopsis thaliana]
          Length = 501

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
 Frame = +3

Query: 462 SASRPGLHLRHDRLQIHQLRLRAVAENIDYVKGWLSGQI----------EEGINSDGAAL 611
           S+SRP +H RH  L  H  +  A++++I + +G  SG++            G+ SDG+AL
Sbjct: 27  SSSRPSIHHRH-HLDNHNYK-DALSKSILFFEGQRSGKLPPNQRMTWRSNSGL-SDGSAL 83

Query: 612 VQGLPSGYFGCSLERSYG 665
              L  GY+       +G
Sbjct: 84  NVDLVGGYYDAGDNMKFG 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,593,151
Number of Sequences: 28952
Number of extensions: 380433
Number of successful extensions: 1178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)