Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G16
         (933 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   1e-16
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)                85   1e-16
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_14281| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.44 
SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_47517| Best HMM Match : Glyco_hydro_18 (HMM E-Value=4.6)            28   9.4  
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  

>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 38/62 (61%), Positives = 45/62 (72%)
 Frame = +1

Query: 487 DNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIES 666
           ++  GE+G+  KPVTYVPP PT DE E+F STI  GINF+K+D I V VSG NP R I S
Sbjct: 653 ESAAGEDGDRPKPVTYVPPTPTEDEEEMFRSTIQQGINFEKYDQIEVLVSGNNPVRHINS 712

Query: 667 FE 672
           FE
Sbjct: 713 FE 714


>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
          Length = 185

 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 38/62 (61%), Positives = 45/62 (72%)
 Frame = +1

Query: 487 DNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIES 666
           ++  GE+G+  KPVTYVPP PT DE E+F STI  GINF+K+D I V VSG NP R I S
Sbjct: 76  ESAAGEDGDRPKPVTYVPPTPTEDEEEMFRSTIQQGINFEKYDQIEVLVSGNNPVRHINS 135

Query: 667 FE 672
           FE
Sbjct: 136 FE 137


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = +1

Query: 523 PVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESF 669
           P+TY+PPE  ++   +F     +GI FD +++I  KVSGEN P  I SF
Sbjct: 433 PITYIPPELPDNIDLLFQDAPHTGIKFDNYENIPSKVSGENQPPKITSF 481


>SB_14281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 14/33 (42%), Positives = 25/33 (75%)
 Frame = +1

Query: 565 EIFSSTISSGINFDKFDHIAVKVSGENPPRPIE 663
           ++F+S  ++GINF+K+D I V+ +G+  P+ IE
Sbjct: 2   DLFASH-NTGINFEKYDDIPVEATGQECPKNIE 33


>SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 112 NTIVMDDDWDDSCEAVVVPPPPLQNH 189
           N  + D D+  + E V+ PPPPL+ H
Sbjct: 125 NRSIHDHDYHWAIENVIPPPPPLEGH 150


>SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 210 VTFIYRIMVL*WGRWHHNSFTGIIP 136
           V F+ RI+   W RWH + F  ++P
Sbjct: 576 VEFVQRIVESFWKRWHRDVFPALVP 600


>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1634

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 210  VTFIYRIMVL*WGRWHHNSFTGIIP 136
            V F+ RI+   W RWH + F  ++P
Sbjct: 1456 VEFVQRIVESFWKRWHRDVFPALLP 1480


>SB_47517| Best HMM Match : Glyco_hydro_18 (HMM E-Value=4.6)
          Length = 374

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +1

Query: 490 NEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVK 630
           N  G +   +    +VPP   +  T++ + +++  ++ +K DH A+K
Sbjct: 267 NMAGGHSRVQHATDHVPPRRQSAPTKVHTESVAPTLSGEKSDHTALK 313


>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1513

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 142 DSCEAVVVPPPPLQNHDSVDEGHS 213
           DS EA   PPPPL   +  DEG S
Sbjct: 466 DSSEAFPPPPPPLAETNEFDEGIS 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,049,945
Number of Sequences: 59808
Number of extensions: 275950
Number of successful extensions: 890
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)