Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G16
(933 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 42 5e-04
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 42 5e-04
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 41 0.001
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 41 0.001
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 33 0.22
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 33 0.22
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 33 0.22
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 28 8.3
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 28 8.3
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +1
Query: 475 NDYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPR 654
N++ D+ G N + + E+ +F T SGINFDK+++I V+VSG++ P
Sbjct: 78 NNFADSGNGFNNNGAESNQWGGAPAEYSESNLFHRT-DSGINFDKYENIPVEVSGDSVPA 136
Query: 655 PIESF 669
IE F
Sbjct: 137 AIEHF 141
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +1
Query: 475 NDYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPR 654
N++ D+ G N + + E+ +F T SGINFDK+++I V+VSG++ P
Sbjct: 59 NNFADSGNGFNNNGAESNQWGGAPAEYSESNLFHRT-DSGINFDKYENIPVEVSGDSVPA 117
Query: 655 PIESF 669
IE F
Sbjct: 118 AIEHF 122
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1
Query: 559 ETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESF 669
E E+FS +S GINFDK++ I V+ +G++ P+PI F
Sbjct: 133 EQELFSGQLS-GINFDKYEEIPVEATGDDVPQPISLF 168
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +1
Query: 559 ETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESF 669
E+ +F T SGINFDK+++I V+VSG++ P IE F
Sbjct: 90 ESNLFHRT-DSGINFDKYENIPVEVSGDSVPAAIEHF 125
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 499 GENGETKKPVTYVPPEPTNDETEIFS-STISSGINFDKFDHIAVKVSGENPPRPIESFEM 675
G GE K TYVP E +E +F+ IS G+ F+KF VK++ + P +++ +
Sbjct: 497 GAEGEGPK-ATYVPVEDNMEE--VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCKT 553
Query: 676 XXILXLG*TL 705
LG T+
Sbjct: 554 FSEANLGETM 563
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 499 GENGETKKPVTYVPPEPTNDETEIFS-STISSGINFDKFDHIAVKVSGENPPRPIESFEM 675
G GE K TYVP E +E +F+ IS G+ F+KF VK++ + P +++ +
Sbjct: 497 GAEGEGPK-ATYVPVEDNMEE--VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCKT 553
Query: 676 XXILXLG*TL 705
LG T+
Sbjct: 554 FSEANLGETM 563
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 499 GENGETKKPVTYVPPEPTNDETEIFS-STISSGINFDKFDHIAVKVSGENPPRPIESFEM 675
G GE K TYVP E +E +F+ IS G+ F+KF VK++ + P +++ +
Sbjct: 497 GAEGEGPK-ATYVPVEDNMEE--VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCKT 553
Query: 676 XXILXLG*TL 705
LG T+
Sbjct: 554 FSEANLGETM 563
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 478 DYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRP 657
++ED E+ E + ++ T+DE E F I S I+ ++ I P+
Sbjct: 43 EFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEEVPQIDFGYDKNGDPQQ 102
Query: 658 IES 666
+ES
Sbjct: 103 LES 105
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 478 DYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRP 657
++ED E+ E + ++ T+DE E F I S I+ ++ I P+
Sbjct: 43 EFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEEVPQIDFGYDKNGDPQQ 102
Query: 658 IES 666
+ES
Sbjct: 103 LES 105
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 127 DDDWDDSCEAVVVPPPPLQNHDSVDEGH-SLSRGRGFPSFNEDDEKE 264
D+D D + + PPPP +N V E SR R E+DE E
Sbjct: 1002 DEDRTDLVKYYLNPPPPPKNEVRVQEEQLEGSRKRKLEQIQEEDEDE 1048
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,378,225
Number of Sequences: 27780
Number of extensions: 208135
Number of successful extensions: 732
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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