Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G16
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       71   2e-14
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   9.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 70.5 bits (165), Expect = 2e-14
 Identities = 33/63 (52%), Positives = 44/63 (69%)
 Frame = +1

Query: 484 EDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIE 663
           EDN+  E  + K+   Y+PPE  NDE  +F + +  GINFDK+D+I V VSG+N P+PIE
Sbjct: 139 EDNDEEEAQKPKEQ--YIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIE 196

Query: 664 SFE 672
           SFE
Sbjct: 197 SFE 199


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 166  PPPPLQNHD 192
            PPPP +NHD
Sbjct: 1860 PPPPPRNHD 1868


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 496 IGENGETKKPVTYVPPEP 549
           +G+N E K  VT  PP P
Sbjct: 324 VGDNVEIKCDVTGTPPPP 341


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 151 EAVVVPPPPLQNHDSVDEGHSLSRGRGFPSFNEDDEKE-NG 270
           E   V P   Q+H S+D  +++S      S  + DE E NG
Sbjct: 529 ETTPVLPSRFQSHPSIDSANTISNS----SLQDYDETEFNG 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,212
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)