Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G16
         (933 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    36   0.038
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    36   0.038
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    35   0.089
At5g35220.1 68418.m04176 peptidase M50 family protein / sterol-r...    31   0.83 
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    31   1.4  
At5g35520.1 68418.m04224 kinetochore protein-related contains Pf...    29   3.3  
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom...    29   3.3  
At1g09710.1 68414.m01090 myb family transcription factor contain...    29   5.8  
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi...    28   7.7  

>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +1

Query: 547 PTNDETE---IFSSTISSGINFDKFDHIAVKVSGENPPRPIESF 669
           P  D+ E   +F+   ++GINFD ++ I V+ SG + P P+ +F
Sbjct: 110 PFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTF 153


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +1

Query: 547 PTNDETE---IFSSTISSGINFDKFDHIAVKVSGENPPRPIESF 669
           P  D+ E   +F+   ++GINFD ++ I V+ SG + P P+ +F
Sbjct: 110 PFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTF 153


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +1

Query: 553 NDETE---IFSSTISSGINFDKFDHIAVKVSGENPPRPIESF 669
           ND++E    F+   ++ INFD ++ I ++ SG+N P P+ +F
Sbjct: 120 NDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161


>At5g35220.1 68418.m04176 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 548

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 475 NDYEDNEIGENGETKKP--VTYVPPEPTNDETEIFSSTISSGINF 603
           N   D+ IGENGET K   V     E  ++ET   SST SS   F
Sbjct: 61  NSNRDDSIGENGETHKSSVVKTATFEEEDEETSKSSSTTSSSNEF 105


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 595 INFDKFDHIAVKVSGENPPRPIESF 669
           INF+ ++ I ++ SG+N P P+ +F
Sbjct: 124 INFEAYEDIPIETSGDNVPPPVNTF 148


>At5g35520.1 68418.m04224 kinetochore protein-related contains Pfam
           PF05859: Mis12 protein
          Length = 285

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 12  LXXTIGNSLRFWQSFVRHYCFG---DLTLSKSSENKKYHCNG 128
           L   I N L+ W+S+   +CF       L KS E+   H +G
Sbjct: 71  LLSVIDNRLKLWESYSLRFCFAVPDGFVLPKSEESSSVHQDG 112


>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to
           HGF-regulated tyrosine kinase substrate [Mus musculus]
           GI:1089781; contains Pfam profiles PF00790: VHS domain,
           PF03127: GAT domain
          Length = 607

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 49  NRSSAIIVLAT*RCRSPV-KIKNTIVMDDDW-DDSCEAVVVPPPPLQNHDSVDEGHSLSR 222
           + S A++ L   +  SPV K  N+IV+ D   D++CE+      P  NH  V + +S   
Sbjct: 322 DNSLALVPLGPPQPSSPVAKPDNSIVLIDMLSDNNCESSTPTSNPHANHQKVQQNYSNGF 381

Query: 223 GRG 231
           G G
Sbjct: 382 GPG 384


>At1g09710.1 68414.m01090 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 689

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -1

Query: 648 RILTTDFYCNMVK-----LVKVNTRAYSTAKDFRLIICWFWRHIGYRLLRFPV 505
           R+L    YC+  K     LVK  T   + A++++L+    WRH+ YR    PV
Sbjct: 35  RMLQEISYCSETKMDWNALVKKTTTGITNAREYQLL----WRHLSYRHPLLPV 83


>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 576

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 532 YVPPEPTNDETEIFSSTISSGINFDKF 612
           YV  E + + TE F+   SSG+ FD++
Sbjct: 295 YVNSEKSGEATEFFTKMHSSGVRFDEY 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,726,437
Number of Sequences: 28952
Number of extensions: 196527
Number of successful extensions: 662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)