Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G15
(951 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.18
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.73
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.96
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 2.2
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.9
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 5.1
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 9.0
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.18
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 464 PXXXNPPPRXPGRXXPXKXXPPPPP 390
P PPP PG P + PPPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 31.1 bits (67), Expect = 0.24
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 464 PXXXNPPPRXPGRXXPXKXXPPPPPP 387
P PPP P P PPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 663 GPPPPXXXPRGSXPRXXXPPXPXRXY 740
G PPP P G P PP P Y
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGY 32
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.73
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 449 PPPRXPGRXXPXKXXPPPPPP 387
PPP PG PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -2
Query: 464 PXXXNPPPRXPGRXXPXKXXPPPPPP 387
P PPP P PPPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +3
Query: 600 PTRPAXGPXPGXRXXXLAFSLGPPPPXXXPRGSXPRXXXPPXP 728
PT PA P P + PPPP G+ P PP P
Sbjct: 742 PT-PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.96
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 449 PPPRXPGRXXPXKXXPPPPPPRTXXPXRGPS 357
PP P P PP PPP T P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = -2
Query: 500 GPXPTXRGGGXXPXXXNPPPRXPGRXXPXKXXPPPPPPRTXXPXRGPS 357
G P + P P P P PP PPP P PS
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 449 PPPRXPGRXXPXKXXPPPPPP 387
PP P + P PPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = -2
Query: 464 PXXXNPPPRXPGRXXPXKXXPPPPPP 387
P P P P PPPPPP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPP 194
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 404 PPPPPPRTXXPXRGPS 357
PPPPPPR P G S
Sbjct: 240 PPPPPPRPSQPTSGES 255
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 342 SXWRRXRAPEQA*EXGRXPXXEQXXGXRXRGEXR 241
S W+R R+PE++ + P EQ R R R
Sbjct: 13 SRWKRERSPERSQRRSQSPPGEQSAYHRERSPLR 46
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 385 RGGGGGGXXFXGXXRPGXRGGG 450
RGG GG G R G RGGG
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGG 39
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = -2
Query: 464 PXXXNPPPRXPGRXXPXKXXPPPPPPRTXXP 372
P PPP P PPPP P + P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.150 0.509
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,091
Number of Sequences: 5004
Number of extensions: 13632
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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