Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G14
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              30   2.1  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)                      29   3.6  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  

>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 202 WNPTNGTPKWWRSRSTFHRLLWTH 273
           W+P   T KWW  R+TF  +   H
Sbjct: 42  WHPGRSTTKWWTRRATFITIFCVH 65


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 207  PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGK 323
            P K  T+V E   H  +   DT   D+E  +  V VDGK
Sbjct: 1711 PQKTSTEVPEPAKHFKEEIQDTHGEDDEEVEEFVEVDGK 1749


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 170  SNYQHVLGINNGTQQTVHPSGGEAVPHFTGCYGH 271
            SN  HVLG  NG    VH +G  A  H  G +G+
Sbjct: 2301 SNGNHVLGNGNGNGNQVHSNGNHA--HSNGFHGN 2332


>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
          Length = 782

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 207 PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGK 323
           P K  T+V E   H      DT   D+E  +  V VDGK
Sbjct: 242 PQKTSTEVPEPAKHFKDEIQDTHGKDDEEVEEFVEVDGK 280


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 205 NPTNGTPKWWRSRSTFHRLLWTHQLVIMSHVK*WLLLMERTFSCALS 345
           NP+  TPK  RSR +      +H L + S+ + +LL   R   C++S
Sbjct: 145 NPSEDTPKAQRSRKSSPLHRGSHALGLCSNSRGYLLYFYRKQPCSIS 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,215,259
Number of Sequences: 59808
Number of extensions: 339514
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)