Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G13
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.057
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.057
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.17
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.23
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.057
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +3
Query: 411 PPXGXXPPPXPPKKKXXXGXXPPPPXGXPPXXGXXXXXXXPPXKXPPXGGXXKXXKKXPP 590
PP PPP P PP P PP PP K PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Query: 591 P 593
P
Sbjct: 204 P 204
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/82 (23%), Positives = 21/82 (25%), Gaps = 3/82 (3%)
Frame = +3
Query: 414 PXGXXPPPXPPKKKXXXGXXPPPPXGXPPXXGXXXXXXXPPXKXP---PXGGXXKXXKKX 584
P PP P + PP P PP P P K
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 585 PPPXGXFXGXXPFXPXXLPPXP 650
PP P P +PP P
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPP 205
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.057
Identities = 22/77 (28%), Positives = 24/77 (31%)
Frame = +2
Query: 320 KXPPPXXKXGGXXXXPXKXPXXXPPXXGGXPPXGGXXPPXPPXKKXFXGGXXPPPXXGPP 499
K PPP P P PP P G PP PP G PPP P
Sbjct: 730 KSPPPPPP-AVIVPTPAPAPIPVPPPA----PIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Query: 500 PXGGXXXFXXPPXKKXP 550
G + P + P
Sbjct: 785 VSAGGSRYYAPAPQAEP 801
Score = 29.9 bits (64), Expect = 0.53
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = +3
Query: 318 KXXPPXXKKXGXXXXPPXXXXXXXPXXXGGXPPXGXXPPPXPPKKKXXXGXXPPPPXGXP 497
K PP P P G PP PPP PP G PPPP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP----PPPPPP---GVAGAGPPPPPPPP 782
Query: 498 P 500
P
Sbjct: 783 P 783
Score = 29.5 bits (63), Expect = 0.70
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 411 PPXGXXPPPXPPKKKXXXGXXPPPPXGXPPXXGXXXXXXXPPXKXPP 551
P P P PP G PPPP PP G PP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGG--PPPP---PPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.70
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +1
Query: 412 PPXGXXPPPAPXKKKXXGGXXPPPPXGXPPXXGXXXXXXXPPKKXPP 552
P P P P GG PPPP PP G PP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGG--PPPP---PPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/72 (29%), Positives = 22/72 (30%)
Frame = +2
Query: 371 KXPXXXPPXXGGXPPXGGXXPPXPPXKKXFXGGXXPPPXXGPPPXGGXXXFXXPPXKKXP 550
K P PP P P PP GG PPP PP G PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP--IMGGPPPPPP--PPGVAGAGPPPPPPPPPAV 785
Query: 551 XGGGXKKXKKXP 586
GG + P
Sbjct: 786 SAGGSRYYAPAP 797
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/46 (28%), Positives = 14/46 (30%)
Frame = +1
Query: 415 PXGXXPPPAPXKKKXXGGXXPPPPXGXPPXXGXXXXXXXPPKKXPP 552
P PPP P G PPPP P P + P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.17
Identities = 21/81 (25%), Positives = 23/81 (28%), Gaps = 5/81 (6%)
Frame = +1
Query: 325 PPPXXKKXGXXXXPXKXXXXXXPXXXGGXPPXGXXPPPAPXKKKXXGGXXPPPP---XGX 495
PPP G P + P P G PPP + PPP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
Query: 496 P--PXXGXXXXXXXPPKKXPP 552
P P G PP PP
Sbjct: 401 PALPPLGNASRTSTPPVPTPP 421
Score = 31.1 bits (67), Expect = 0.23
Identities = 21/91 (23%), Positives = 24/91 (26%)
Frame = +3
Query: 339 KKXGXXXXPPXXXXXXXPXXXGGXPPXGXXPPPXPPKKKXXXGXXPPPPXGXPPXXGXXX 518
KK PP P G PPP PP + G P PP G
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSS-NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Query: 519 XXXXPPXKXPPXGGXXKXXKKXPPPXGXFXG 611
+ PP + P P G
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 411 PPXGXXPPPXPPKKKXXXGXXPPPPXG 491
PP PPP PP + PPPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 29.1 bits (62), Expect = 0.92
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +1
Query: 475 PPPPXGXPPXXGXXXXXXXPPKKXPPXGGXKKXXKKXPPXGG 600
PPPP PP G PP PP G KK K P G
Sbjct: 9 PPPP---PPPPGFEPPSQPPPP--PPPGYVKKRKNKTPAQSG 45
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 412 PPXGXXPPPAPXKKKXXGGXXPPPPXG 492
PP PPP P + PPPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 474 PPPPXGXPPXXGXXXXXXXPPXKXPPXGGXXKXXKKXPPPXG 599
PPPP PP G PP PP G K K P G
Sbjct: 9 PPPP---PPPPGFEPPSQPPP--PPPPGYVKKRKNKTPAQSG 45
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/71 (30%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Frame = -2
Query: 599 PPXGGXFFXXFXXPPXGGXFXGGXXXXXXXPXX-GGXPXGGGGXXPPXXFFFXGAGGGXX 423
PP G F F G GG P G P G GG G GGG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
Query: 422 PXGGXPPXXXG 390
GG P G
Sbjct: 260 GFGGGPGGHGG 270
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +1
Query: 475 PPPPXGXPPXXGXXXXXXXPPKKXPP 552
PPPP PP PP PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +3
Query: 474 PPPPXGXPPXXGXXXXXXXPPXKXPP 551
PPPP PP PP PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +3
Query: 411 PPXGXXPPPXPPKKKXXXGXXPPPP 485
PP PPP P PPPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.7
Identities = 25/108 (23%), Positives = 25/108 (23%), Gaps = 1/108 (0%)
Frame = +2
Query: 329 PPXXKXGGXXXXPXKXPXXXP-PXXGGXPPXGGXXPPXPPXKKXFXGGXXPPPXXGPPPX 505
PP G P P P G PP PP P P PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 506 GGXXXFXXPPXKKXPXGGGXKKXKKXPPPXGXFXXGXPXXXPXXXPXP 649
PP K G PP G P P P
Sbjct: 1172 PAPSS-GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,961
Number of Sequences: 5004
Number of extensions: 25731
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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