Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G12
(962 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 25 0.77
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 25 0.77
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 9.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 9.5
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 25.4 bits (53), Expect = 0.77
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 123 LGIIICHPGCNCKLVCLYNNVK 58
L I IC PGC C+L L N K
Sbjct: 62 LCIKICAPGCVCRLGYLRNKKK 83
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 25.4 bits (53), Expect = 0.77
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 123 LGIIICHPGCNCKLVCLYNNVK 58
L I IC PGC C+L L N K
Sbjct: 62 LCIKICAPGCVCRLGYLRNKKK 83
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 154 VVVDLFQSLGPGYYYLPSWLQLQISLFIQ 68
V+V +F P Y +PSW+++ LF+Q
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM---LFLQ 301
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 154 VVVDLFQSLGPGYYYLPSWLQLQISLFIQ 68
V+V +F P Y +PSW+++ LF+Q
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM---LFLQ 301
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 154 VVVDLFQSLGPGYYYLPSWLQLQISLFIQ 68
V+V +F P Y +PSW+++ LF+Q
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM---LFLQ 301
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 154 VVVDLFQSLGPGYYYLPSWLQLQISLFIQ 68
V+V +F P Y +PSW+++ LF+Q
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM---LFLQ 301
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 154 VVVDLFQSLGPGYYYLPSWLQLQISLFIQ 68
V+V +F P Y +PSW+++ LF+Q
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM---LFLQ 301
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 154 VVVDLFQSLGPGYYYLPSWLQLQISLFIQ 68
V+V +F P Y +PSW+++ LF+Q
Sbjct: 276 VLVLIFHHRTPDRYVMPSWIKM---LFLQ 301
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 154 VVVDLFQSLGPGYYYLPSWLQLQISLFIQ 68
V+V F P Y +PSW+++ LF+Q
Sbjct: 344 VLVLNFHHRTPDRYVMPSWIKM---LFLQ 369
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 154 VVVDLFQSLGPGYYYLPSWLQLQISLFIQ 68
V+V F P Y +PSW+++ LF+Q
Sbjct: 344 VLVLNFHHRTPDRYVMPSWIKM---LFLQ 369
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,967
Number of Sequences: 438
Number of extensions: 2134
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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