Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G11
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    52   2e-07
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    26   8.6  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    26   8.6  

>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
 Frame = +2

Query: 437 MASRDRTSEFISTVRSLQGRFLNKPTVRDDRKAAVLETY---SQFMSMAKVISKNITSTY 607
           M+ +DRT+EF + V   + R   + T  +       +T    S+F  +A+ I+  I  T 
Sbjct: 1   MSFQDRTAEFQACVTKTRSRL--RTTTANQAVGGPDQTKHQKSEFTRIAQKIANQINQTG 58

Query: 608 TXXXXXXXXXXXXXXFDDRPTEIQELTYIIKGDLNSLNQQIARLGEM 748
                          FDDRP EIQELT+ IK  L+SLN  IA L ++
Sbjct: 59  EKLQKLSQLAKRKTLFDDRPVEIQELTFQIKQSLSSLNSDIASLQQV 105


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 212 TEDYNAMLPRRRNIGVTERLLETETDSYNKLDKKGVHYGESRPYENSSNSKSTLILKSS 388
           T+  N    +R+ + V   L   E  +Y  L ++ +    S PY  S ++ S+++ KSS
Sbjct: 470 TKQINLFYEKRKTLAVIPDL-SIEAKTYESLREQLLKIDPSTPYHISYHAFSSVLSKSS 527


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -1

Query: 281 LFPRVFL*RLYFAFEEASHCSLQSSLRKPIAFK*-LRTFIVHSCVYNIYHFISSILFKTR 105
           +FP +++  +    ++ +  +   +  K   F+  L  FI   C   + H++S+I+F   
Sbjct: 237 VFPAIWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLHYLSNIIFGN- 295

Query: 104 *YIYLLNYQV-PLFHFLDKV 48
            + Y L+  +  LF F++K+
Sbjct: 296 -FDYRLSVIIGDLFTFMEKI 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,481
Number of Sequences: 5004
Number of extensions: 55812
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)