Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G11
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0560 + 4117203-4117458,4119359-4119609,4119691-4119860,412...    36   0.045
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    31   1.3  

>01_01_0560 +
           4117203-4117458,4119359-4119609,4119691-4119860,
           4120188-4120385,4120922-4121081
          Length = 344

 Score = 35.9 bits (79), Expect = 0.045
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +2

Query: 524 DRKAAVLETYSQFMSMAKVISKNITSTYTXXXXXXXXXXXXXXFDDRPTEIQELTYIIKG 703
           D        +S+F   A  I   I  T                FDD   EIQELT +IK 
Sbjct: 50  DVSRGAASAHSEFNRRASKIGLGIHQTSQKLARLAKLAKRTSVFDDPTVEIQELTAVIKK 109

Query: 704 DLNSLNQQIARL 739
           D+ +LN  +  L
Sbjct: 110 DITALNSAVVDL 121


>02_05_0101 -
           25824093-25824112,25824734-25824842,25824927-25826429,
           25826596-25827333,25827712-25827919,25828455-25830409,
           25830868-25830960,25831044-25831100,25831189-25831272,
           25831345-25831437,25831622-25832053,25833593-25833933,
           25834663-25835215
          Length = 2061

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 218 DYNAMLPR---RRNIGVTERLLETETDSYNKLDKKGVHYGESRPYENSSNSKSTLILKSS 388
           D+ A++PR    RN    +  L TETD Y   D    H  E++     S  KST  L+S+
Sbjct: 603 DHGAVIPRLEVSRNSWELDDCL-TETDRYGVFDNVVRHLDEAQIQH--SVFKSTEFLRST 659

Query: 389 DQDVFKFLEE 418
           D D+  F+ E
Sbjct: 660 DMDMLTFVCE 669


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,398
Number of Sequences: 37544
Number of extensions: 287626
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)