Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G11
         (914 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)                 33   0.32 
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     30   3.0  

>SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)
          Length = 497

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +2

Query: 446 RDRTSEFISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMSMAK 577
           RDRT+EF S V+S+Q R     T+  D K +VLE  +Q +   K
Sbjct: 41  RDRTTEFYSAVKSIQSRQSKLATMSKDFK-SVLEVRTQNLKQQK 83


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +2

Query: 266 RLLETETDS---YNKLDKKGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPV 436
           R  E ET++     KLD+   H    +P+E+ S+   T    S+D +  K  E  +   +
Sbjct: 687 RRREAETEAKVLLQKLDRNETHTSRDQPWESVSSHSRTSSGSSNDMEFTKEEETRLKSYI 746

Query: 437 MASRDRTSEFISTVRSLQG-RFLNKP 511
              R   S   STV  L+    ++KP
Sbjct: 747 QQLRSERSTIGSTVLELESIHGMDKP 772


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,925,382
Number of Sequences: 59808
Number of extensions: 359409
Number of successful extensions: 727
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)