Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G11
         (914 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05760.1 68418.m00634 syntaxin 31 (SYP31) / SED5 identical to...    39   0.005
At3g24350.1 68416.m03057 syntaxin, putative (SYP32) similar to S...    37   0.016
At1g53180.1 68414.m06027 expressed protein                             35   0.086
At5g06905.1 68418.m00780 cytochrome P450 family protein similar ...    29   4.3  
At2g11520.1 68415.m01242 protein kinase family protein contains ...    28   9.9  

>At5g05760.1 68418.m00634 syntaxin 31 (SYP31) / SED5 identical to
           SP|Q9FFK1 Syntaxin 31 (AtSYP31) (AtSED5) {Arabidopsis
           thaliana}
          Length = 336

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
 Frame = +2

Query: 446 RDRTSEFISTVRSLQ--GRFLNKPTVRDDRKAAVLETY-SQFMSMAKVISKNITSTYTXX 616
           RDRT E  S  ++L+  G   +     DD  ++   +  S+F   A  I   I  T    
Sbjct: 6   RDRTVELHSLSQTLKKIGAIPSVHQDEDDPASSKRSSPGSEFNKKASRIGLGIKETSQKI 65

Query: 617 XXXXXXXXXXXXFDDRPTEIQELTYIIKGDLNSLNQQIARLGEMQ 751
                       F+DR  EIQELT +I+ D+  LN  ++ L  +Q
Sbjct: 66  TRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQ 110


>At3g24350.1 68416.m03057 syntaxin, putative (SYP32) similar to
           SP|Q9FFK1 Syntaxin 31 (AtSYP31) (AtSED5) {Arabidopsis
           thaliana}, syntaxin 5A GB:NP_003155 from [Homo sapiens]
           (J. Mol. Neurosci. (1997) 8 (2), 159-161)
          Length = 347

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
 Frame = +2

Query: 446 RDRTSEFISTVRSLQGRFLNKPTVR---------DDRKAAVLETYSQFMSMAKVISKNIT 598
           RDR+ EF   V +L+      P            D  +   L   S+F   A  I   I 
Sbjct: 11  RDRSDEFFKIVETLRRSIAPAPAANNVPYGNNRNDGARREDLINKSEFNKRASHIGLAIN 70

Query: 599 STYTXXXXXXXXXXXXXXFDDRPTEIQELTYIIKGDLNSLNQQIARL 739
            T                FDD   EIQELT +IK ++++LN  +  L
Sbjct: 71  QTSQKLSKLAKLAKRTSVFDDPTQEIQELTVVIKQEISALNSALVDL 117


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +2

Query: 311 KGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQ 490
           +G+ Y  S PY +SS S ST   K  D D+ K LE      ++ +    S    +   L 
Sbjct: 30  RGLRYCHSDPYPSSS-STSTSPEKMGDSDIGKVLEASTGRSLIRASSIDSREGGSQTKLT 88

Query: 491 GRFLNKPTVRDDRK 532
           GRF  K  V++ R+
Sbjct: 89  GRFSEKIRVQEQRQ 102


>At5g06905.1 68418.m00780 cytochrome P450 family protein similar to
           SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-)
           {Glycine max}; contains Pfam profile PF00067: Cytochrome
           P450
          Length = 521

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +2

Query: 317 VHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQGR 496
           +  G  R    S +  + LILK+ D D   F  +FVF P   +  + SEF +       R
Sbjct: 68  IRIGSLRVLVVSDSDTAKLILKTHDPD---FASKFVFGPRQFNVYKGSEFFNAPYGSYWR 124

Query: 497 FLNK 508
           F+ K
Sbjct: 125 FMKK 128


>At2g11520.1 68415.m01242 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 510

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +2

Query: 311 KGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMAS--RDRTSEFISTVRS 484
           K  H   ++PY+  S       +  +  +  +F E   F         D  S+   T+ S
Sbjct: 41  KSDHLTYTKPYQQGS----LFTINGNPVEKLRFCEALRFHKANGCIFEDSFSDDFCTIHS 96

Query: 485 LQGR-FLNKPTVRDDRKAAVLETYS 556
           L GR FL + TV+D + +     YS
Sbjct: 97  LLGRRFLEEKTVKDSKNSKPKTEYS 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,453
Number of Sequences: 28952
Number of extensions: 261783
Number of successful extensions: 572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)