Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G08
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    29   6.0  

>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 518 RPNTQTASPRXLADSLXQRKPPTP 447
           RPNT T S      S+ QRKPP P
Sbjct: 241 RPNTATPSSSNNRRSMDQRKPPMP 264


>AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical
           protein M01B12.4c protein.
          Length = 678

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 518 RPNTQTASPRXLADSLXQRKPPTP 447
           RPNT T S      S+ QRKPP P
Sbjct: 231 RPNTATPSSSNNRRSMDQRKPPMP 254


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 518 RPNTQTASPRXLADSLXQRKPPTP 447
           RPNT T S      S+ QRKPP P
Sbjct: 231 RPNTATPSSSNNRRSMDQRKPPMP 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,081,609
Number of Sequences: 27780
Number of extensions: 220892
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)