Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G08
         (905 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16110.1 68417.m02442 two-component responsive regulator fami...    30   1.8  
At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid ...    28   7.4  

>At4g16110.1 68417.m02442 two-component responsive regulator family
           protein / response regulator family protein similar to
           ARR2 protein GI:4210451 from [Arabidopsis thaliana];
           contains Pfam profile: PF00072 response regulator
           receiver domain
          Length = 644

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 339 KAFFSLHSSCGLSKLINVSYHVWIQLTLXKGRSAAATTGSG 217
           ++ F L S+ G+S  ++VSY   +  +  KG S+AAT G G
Sbjct: 466 RSSFPLASAPGISVPVSVSYQEEVNSSDAKGGSSAATAGFG 506


>At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid
           3'-hydroxylase (F3'H) / cytochrome P450 75B1 (CYP75B1) /
           transparent testa 7 protein (TT7) identical to SP|Q9SD85
           Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid
           3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1)
           (TRANSPARENT TESTA 7 protein) {Arabidopsis thaliana};
           similar to gi:10334806, gi:10334808
          Length = 513

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 532 RKRKSAPIRKPPLPGXWPIH*XRENLPHLXPEP 434
           R+ +S   R PP P  WPI     NLPH+  +P
Sbjct: 24  RRNRSHNNRLPPGPNPWPI---IGNLPHMGTKP 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,314,203
Number of Sequences: 28952
Number of extensions: 205742
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)