Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G07
         (917 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   4.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   4.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   4.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.8  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 314 PRCPPNCSARVDEAFPTAGHSYSK 385
           P   PNC  +     P +GH  S+
Sbjct: 137 PNVTPNCDVKSSVCSPGSGHQDSR 160



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +3

Query: 309 CSRAAHQTALRGSTKPSPQLATLTPKVRAFVERSAALCQPEHVH 440
           C     Q  +  S+     LA +TP V    +  +++C P   H
Sbjct: 113 CESLNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGH 156


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 314 PRCPPNCSARVDEAFPTAGHSYSK 385
           P   PNC  +     P +GH  S+
Sbjct: 137 PNVTPNCDVKSSVCSPGSGHQDSR 160



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +3

Query: 309 CSRAAHQTALRGSTKPSPQLATLTPKVRAFVERSAALCQPEHVH 440
           C     Q  +  S+     LA +TP V    +  +++C P   H
Sbjct: 113 CESLNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGH 156


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 314 PRCPPNCSARVDEAFPTAGHSYSK 385
           P   PNC  +     P +GH  S+
Sbjct: 137 PNVTPNCDVKSSVCSPGSGHQDSR 160



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +3

Query: 309 CSRAAHQTALRGSTKPSPQLATLTPKVRAFVERSAALCQPEHVH 440
           C     Q  +  S+     LA +TP V    +  +++C P   H
Sbjct: 113 CESLNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGH 156


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 569 PGNVCRVCPG 540
           PG  C+ CPG
Sbjct: 101 PGRCCKTCPG 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,313
Number of Sequences: 336
Number of extensions: 2319
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)