Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G07
         (917 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        79   5e-15
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       77   3e-14
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)                  31   0.99 
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)                    30   3.0  

>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 79.0 bits (186), Expect = 5e-15
 Identities = 35/82 (42%), Positives = 51/82 (62%)
 Frame = +3

Query: 372 TLTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTD 551
           +L  KV+ FV  +  LCQP+ +H+CDGS  E ++            +L + +N ++ RTD
Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTD 213

Query: 552 PADVARVESRTFICSDRESDVV 617
           P DVARVES+TFIC++ E D V
Sbjct: 214 PGDVARVESKTFICTENERDAV 235


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 76.6 bits (180), Expect = 3e-14
 Identities = 36/81 (44%), Positives = 48/81 (59%)
 Frame = +3

Query: 375 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 554
           L  KV+ FVE +A L  P  +H+CDGS+ E +A             L +++NC+   TDP
Sbjct: 14  LPKKVQEFVEENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDP 73

Query: 555 ADVARVESRTFICSDRESDVV 617
            DVARVESRTFIC+  + D V
Sbjct: 74  QDVARVESRTFICTKCKDDAV 94


>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
          Length = 227

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 590 YERAGFNPGNVCRVCPGQPTVIVLGQ 513
           Y ++ FNP N CRVC    +  VLGQ
Sbjct: 32  YAKSLFNPNNFCRVCNANTSKRVLGQ 57


>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
          Length = 287

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 584 RAGFNPGNVCRVCPGQPTVIVLGQ 513
           ++ FNP N CR+C    +  VLGQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,877
Number of Sequences: 59808
Number of extensions: 310467
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)