Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G07
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical ...    65   8e-11
AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical ...    65   8e-11
Z83122-8|CAF31484.1|  582|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z83122-7|CAF31483.1|  618|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z83122-5|CAB05600.1|  654|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z83122-6|CAF31482.1|  587|Caenorhabditis elegans Hypothetical pr...    53   2e-07
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.22 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.22 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.22 
AL032637-6|CAA21620.2|  422|Caenorhabditis elegans Hypothetical ...    29   6.2  
Z79639-3|CAB01918.1|  385|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical
           protein W05G11.6d protein.
          Length = 594

 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 33/83 (39%), Positives = 47/83 (56%)
 Frame = +3

Query: 369 ATLTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLART 548
           A+L+PKV+ FV   A L  P  +++CDGS+ E                L  Y+N +L RT
Sbjct: 38  ASLSPKVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRT 97

Query: 549 DPADVARVESRTFICSDRESDVV 617
           DP DVARVES+T++ +  + D V
Sbjct: 98  DPRDVARVESKTWMVTKDKYDSV 120


>AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical
           protein W05G11.6a protein.
          Length = 651

 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 33/83 (39%), Positives = 47/83 (56%)
 Frame = +3

Query: 369 ATLTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLART 548
           A+L+PKV+ FV   A L  P  +++CDGS+ E                L  Y+N +L RT
Sbjct: 38  ASLSPKVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRT 97

Query: 549 DPADVARVESRTFICSDRESDVV 617
           DP DVARVES+T++ +  + D V
Sbjct: 98  DPRDVARVESKTWMVTKDKYDSV 120


>Z83122-8|CAF31484.1|  582|Caenorhabditis elegans Hypothetical
           protein R11A5.4b protein.
          Length = 582

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 30/81 (37%), Positives = 45/81 (55%)
 Frame = +3

Query: 375 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 554
           L  KV+ F+   A L +P  + +CDGS+ EA              +L  Y+N ++ RTDP
Sbjct: 53  LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 112

Query: 555 ADVARVESRTFICSDRESDVV 617
            DVARVES+T++ +  + D V
Sbjct: 113 KDVARVESKTWMVTKNKYDTV 133


>Z83122-7|CAF31483.1|  618|Caenorhabditis elegans Hypothetical
           protein R11A5.4d protein.
          Length = 618

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 30/81 (37%), Positives = 45/81 (55%)
 Frame = +3

Query: 375 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 554
           L  KV+ F+   A L +P  + +CDGS+ EA              +L  Y+N ++ RTDP
Sbjct: 17  LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 76

Query: 555 ADVARVESRTFICSDRESDVV 617
            DVARVES+T++ +  + D V
Sbjct: 77  KDVARVESKTWMVTKNKYDTV 97


>Z83122-5|CAB05600.1|  654|Caenorhabditis elegans Hypothetical
           protein R11A5.4a protein.
          Length = 654

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 30/81 (37%), Positives = 45/81 (55%)
 Frame = +3

Query: 375 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 554
           L  KV+ F+   A L +P  + +CDGS+ EA              +L  Y+N ++ RTDP
Sbjct: 53  LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 112

Query: 555 ADVARVESRTFICSDRESDVV 617
            DVARVES+T++ +  + D V
Sbjct: 113 KDVARVESKTWMVTKNKYDTV 133


>Z83122-6|CAF31482.1|  587|Caenorhabditis elegans Hypothetical
           protein R11A5.4c protein.
          Length = 587

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/65 (36%), Positives = 37/65 (56%)
 Frame = +3

Query: 423 QPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDPADVARVESRTFICSDR 602
           +P  + +CDGS+ EA              +L  Y+N ++ RTDP DVARVES+T++ +  
Sbjct: 2   RPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDPKDVARVESKTWMVTKN 61

Query: 603 ESDVV 617
           + D V
Sbjct: 62  KYDTV 66


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 18/35 (51%), Positives = 18/35 (51%)
 Frame = -3

Query: 633 RREPRGPRRSPDRSI*TCGIQPGQRLPGLSGPTNS 529
           R EPRGPRRSP       G  P  R P  S PT S
Sbjct: 401 REEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGS 435


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 18/35 (51%), Positives = 18/35 (51%)
 Frame = -3

Query: 633 RREPRGPRRSPDRSI*TCGIQPGQRLPGLSGPTNS 529
           R EPRGPRRSP       G  P  R P  S PT S
Sbjct: 422 REEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGS 456


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 18/35 (51%), Positives = 18/35 (51%)
 Frame = -3

Query: 633 RREPRGPRRSPDRSI*TCGIQPGQRLPGLSGPTNS 529
           R EPRGPRRSP       G  P  R P  S PT S
Sbjct: 407 REEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGS 441


>AL032637-6|CAA21620.2|  422|Caenorhabditis elegans Hypothetical
           protein Y43F8C.6 protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 308 MQPRCPPNCSARVDEAFPTAGHSYSK 385
           M    P N +A+V E F TAGH++ K
Sbjct: 144 MDQPAPVNLAAKVAEVFLTAGHAFQK 169


>Z79639-3|CAB01918.1|  385|Caenorhabditis elegans Hypothetical
           protein F54E4.4 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 313 AALPTKLLCEGRRSLPHSWPLLLQRSARSWSAALLCASR-STCTCAT 450
           A +PT  +CE + SL   W    + S   +   L CA    TC CA+
Sbjct: 247 APIPTPKVCEDKHSLCCFWATTGECSRNPFWMKLNCAKTCGTCDCAS 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,527,722
Number of Sequences: 27780
Number of extensions: 226691
Number of successful extensions: 737
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)