Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G06
(910 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 77 2e-14
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 73 3e-13
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 73 3e-13
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 73 3e-13
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 72 6e-13
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 72 6e-13
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 71 8e-13
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 70 2e-12
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 70 2e-12
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 68 8e-12
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 68 1e-11
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 56 1e-10
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 64 2e-10
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 63 3e-10
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 62 4e-10
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 62 4e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 61 1e-09
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 59 3e-09
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 57 1e-08
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 57 1e-08
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 57 2e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 56 2e-08
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 56 2e-08
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 56 3e-08
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 56 4e-08
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 55 7e-08
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 55 7e-08
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 54 1e-07
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 54 1e-07
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 53 2e-07
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 53 2e-07
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 53 2e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 52 7e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 52 7e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 52 7e-07
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 52 7e-07
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 51 9e-07
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 51 1e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 50 2e-06
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 50 2e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 49 5e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 49 5e-06
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 49 5e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 49 5e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 48 7e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 48 7e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 48 7e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 48 9e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 48 9e-06
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 48 9e-06
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 48 9e-06
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 48 9e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 48 9e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 48 9e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 48 9e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 48 1e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 48 1e-05
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 47 2e-05
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 47 2e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 46 3e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 46 3e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 46 3e-05
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 46 5e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 46 5e-05
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 45 6e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 44 1e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 44 1e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 44 2e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 43 2e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 43 2e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 42 4e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 42 4e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 42 6e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 42 6e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 42 6e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 6e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 42 6e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 6e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 41 0.001
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 41 0.001
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 41 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 41 0.001
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 0.002
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 40 0.002
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 40 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 40 0.002
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.002
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 40 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 40 0.002
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 40 0.002
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 40 0.003
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 40 0.003
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 40 0.003
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 39 0.004
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 39 0.005
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 39 0.005
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 39 0.005
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 39 0.005
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.007
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.007
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 38 0.007
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 38 0.007
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.009
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 38 0.009
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.009
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 38 0.009
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.009
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.009
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 38 0.012
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 38 0.012
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 38 0.012
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 38 0.012
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.012
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 37 0.021
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 36 0.028
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 36 0.037
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 36 0.037
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 36 0.037
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 36 0.037
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 36 0.049
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.049
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 36 0.049
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.058
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.065
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 35 0.065
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.086
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 35 0.086
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 35 0.086
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 35 0.086
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 35 0.086
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 34 0.11
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 34 0.15
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 0.15
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 34 0.15
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.20
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.20
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.26
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 33 0.26
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 32 0.46
At4g21930.1 68417.m03172 expressed protein contains Pfam profile... 31 1.1
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 31 1.1
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 1.1
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 31 1.4
At3g32930.1 68416.m04173 expressed protein 30 1.8
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 30 1.8
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.8
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 2.4
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 30 2.4
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 29 3.2
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 29 3.2
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 29 3.2
At1g68150.1 68414.m07785 WRKY family transcription factor simila... 29 3.2
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 28 9.8
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 28 9.8
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 28 9.8
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 9.8
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L+VLG+PW + ++DY S FGDL V +D TG S+GFG++ FA E AL
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64
Query: 629 HMIDGRWCDVRIPNGKDGSSTAHRKV---FVGRCTENITAEDLREYF 760
H + R +V++ K+ +KV FV R +++ D R +F
Sbjct: 65 HFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHF 111
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +2
Query: 422 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 601
P R + + V LP + + + +RDYF FG + + +D + +GFGF+ FAE
Sbjct: 233 PTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENG 292
Query: 602 AQLRALGRRHMIDGR 646
R R H I G+
Sbjct: 293 VADRVARRSHEICGQ 307
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 701 KVFVGRCTENITAEDLREYFG 763
K+FVGR + + +DLR+YFG
Sbjct: 241 KIFVGRLPQEASVDDLRDYFG 261
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 72.9 bits (171), Expect = 3e-13
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 19/123 (15%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + G+ W T EE +RDYFS++GD++ + RD TG ++GFGFI FA+ R + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 629 HMIDGRWCDVR--IPNG-----KDGSSTAH------------RKVFVGRCTENITAEDLR 751
H+IDGR + + +P K +S H +K+FVG +IT E+ +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 752 EYF 760
YF
Sbjct: 128 NYF 130
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
R + V GLP TEE ++YF FG + V V D T +GFGFI F +A R
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 617 LGRR-HMIDGRWCDVR 661
L + H ++G+ +V+
Sbjct: 168 LHKTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 72.9 bits (171), Expect = 3e-13
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 19/123 (15%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + G+ W T EE +RDYFS++GD++ + RD TG ++GFGFI FA+ R + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 629 HMIDGRWCDVR--IPNG-----KDGSSTAH------------RKVFVGRCTENITAEDLR 751
H+IDGR + + +P K +S H +K+FVG +IT E+ +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 752 EYF 760
YF
Sbjct: 128 NYF 130
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
R + V GLP TEE ++YF FG + V V D T +GFGFI F +A R
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 617 LGRR-HMIDGRWCDVR 661
L + H ++G+ +V+
Sbjct: 168 LHKTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 72.9 bits (171), Expect = 3e-13
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 19/123 (15%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + G+ W T EE +RDYFS++GD++ + RD TG ++GFGFI FA+ R + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 629 HMIDGRWCDVR--IPNG-----KDGSSTAH------------RKVFVGRCTENITAEDLR 751
H+IDGR + + +P K +S H +K+FVG +IT E+ +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 752 EYF 760
YF
Sbjct: 128 NYF 130
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
R + V GLP TEE ++YF FG + V V D T +GFGFI F +A R
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 617 LGRR-HMIDGRWCDVR 661
L + H ++G+ +V+
Sbjct: 168 LHKTFHELNGKLVEVK 183
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 71.7 bits (168), Expect = 6e-13
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 15/119 (12%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + G+ W+T+E+ +RDYF SFG++L + +D TG ++GFGF+ FA+ R + +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 629 HMIDGRWCDVR--IPN------GKDGSS-------TAHRKVFVGRCTENITAEDLREYF 760
H+IDG+ + + +P K SS + +K+FVG ++T + ++YF
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
Score = 47.2 bits (107), Expect = 2e-05
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 419 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 598
SP P + V GL TE + YF+ FG + V V D RT +GFGFI +
Sbjct: 99 SPGPS-NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Query: 599 EAQLRALGRR-HMIDGRWCDVRIPNGKD 679
EA + L + H ++G+ +V++ KD
Sbjct: 158 EAVDKVLQKTFHELNGKMVEVKLAVPKD 185
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 71.7 bits (168), Expect = 6e-13
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 15/119 (12%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + G+ W+T+E+ +RDYF SFG++L + +D TG ++GFGF+ FA+ R + +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 629 HMIDGRWCDVR--IPN------GKDGSS-------TAHRKVFVGRCTENITAEDLREYF 760
H+IDG+ + + +P K SS + +K+FVG ++T + ++YF
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
Score = 47.2 bits (107), Expect = 2e-05
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 419 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 598
SP P + V GL TE + YF+ FG + V V D RT +GFGFI +
Sbjct: 99 SPGPS-NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Query: 599 EAQLRALGRR-HMIDGRWCDVRIPNGKD 679
EA + L + H ++G+ +V++ KD
Sbjct: 158 EAVDKVLQKTFHELNGKMVEVKLAVPKD 185
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 71.3 bits (167), Expect = 8e-13
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 19/123 (15%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + G+ W T E +R+YFS+FG++L V V R+ TG +GFGF+ F++ R L +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 629 HMIDGRWCDVR--------IPNGKDGSSTAHR-----------KVFVGRCTENITAEDLR 751
H ID R DV+ P G+ G+ A R K+FVG +T+++ R
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFR 127
Query: 752 EYF 760
YF
Sbjct: 128 AYF 130
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQLR 613
R + V GLP T + R YF ++G + + D T +GFGF+ F +E L
Sbjct: 108 RTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLV 167
Query: 614 ALGRRHMIDGRWCDVRIPNGKDGS 685
H ++G+ +V+ KD +
Sbjct: 168 LHKTFHDLNGKQVEVKRALPKDAN 191
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + G+ W T EE +++YFSSFG+++ + +D TG ++GFGF+ FA+ + +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 629 HMIDGRWCDVR--IP---------------NGKDGSSTAHRKVFVGRCTENITAEDLREY 757
H IDGR + + +P G G RK+FVG ++T D + Y
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 758 F 760
F
Sbjct: 128 F 128
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 419 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 598
SP R + V GLP TE + YF FG V V D T +GFGFI +
Sbjct: 100 SPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE 159
Query: 599 EAQLRALGRR-HMIDGRWCDVR 661
EA + L + H ++G+ +V+
Sbjct: 160 EAVEKVLLKTFHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + G+ W T EE +++YFSSFG+++ + +D TG ++GFGF+ FA+ + +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 629 HMIDGRWCDVR--IP---------------NGKDGSSTAHRKVFVGRCTENITAEDLREY 757
H IDGR + + +P G G RK+FVG ++T D + Y
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 758 F 760
F
Sbjct: 128 F 128
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 419 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 598
SP R + V GLP TE + YF FG V V D T +GFGFI +
Sbjct: 100 SPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE 159
Query: 599 EAQLRALGRR-HMIDGRWCDVR 661
EA + L + H ++G+ +V+
Sbjct: 160 EAVEKVLLKTFHELNGKMVEVK 181
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 68.1 bits (159), Expect = 8e-12
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 22/126 (17%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + G+ W T EE +++YF +GDL+ + RD TG ++GFGFI FA+ R + +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 629 HMIDGRWCDVR--IP--------------------NGKDGSSTAHRKVFVGRCTENITAE 742
H+IDGR + + +P +G +G +K+FVG +IT
Sbjct: 77 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 136
Query: 743 DLREYF 760
+ + YF
Sbjct: 137 EFKNYF 142
Score = 48.8 bits (111), Expect = 5e-06
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
R + V GLP TE ++YF FG + V V D T +GFGFI F E+
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179
Query: 617 LGRR-HMIDGRWCDVRIPNGKD-GSSTAHRKVFVG 715
L + H ++G+ +V+ K+ S+T +R +G
Sbjct: 180 LHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIG 214
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 67.7 bits (158), Expect = 1e-11
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L V G+ W+TT E +YF FG+++ + D TG +GFGF+ FA+ + L
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEED 127
Query: 629 HMIDGRWCDVR--IPNG-KDGSSTA---HRKVFVGRCTENITAEDLREYF 760
H+ID R D++ +P G KD A RK+FVG + ++L+ YF
Sbjct: 128 HVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYF 177
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA--QLRALG 622
+ V GLP E+ +++YF +GD++ Q+ D TG S+GFGF+ F ++ +L + G
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 623 RRHMIDGRWCDVR 661
+ H + + +++
Sbjct: 219 KVHELGDKQVEIK 231
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 56.0 bits (129), Expect(2) = 1e-10
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L V G+ +T+EEA++ YFS +G +L V ++ TG +GFGF++FA ++AL
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 629 HMIDGRWCDVR 661
H I G+ DVR
Sbjct: 68 HFILGKPVDVR 78
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQLR 613
R + V GL TTEE + YF FG V V D T +GFGF+ + +E ++
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVV 177
Query: 614 ALGRRHMIDGRWCDVRIPNGKDG 682
H + + +V+ K+G
Sbjct: 178 MQSNFHELSDKRVEVKRAIPKEG 200
Score = 27.9 bits (59), Expect(2) = 1e-10
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 677 DGSSTAHRKVFVGRCTENITAEDLREYF 760
+G ++ +K+FVG + N T E+ + YF
Sbjct: 113 NGVTSRTKKIFVGGLSSNTTEEEFKSYF 140
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 63.7 bits (148), Expect = 2e-10
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 19/123 (15%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L V G+ W+T E+ +R++F+++G++ V RD TG +GFGF+ F++ R L +
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 629 HMIDGRWCDVRIP--------NGKDGSSTAHR-----------KVFVGRCTENITAEDLR 751
H ID R DV+ +G+ G+ R K+FVG +T E+ R
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFR 127
Query: 752 EYF 760
+YF
Sbjct: 128 QYF 130
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ V GLP T+E R YF +G + V + D T +GFGF+ F +A L +
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKT 171
Query: 629 -HMIDGRWCDVRIPNGKDGS 685
H + G+ +V+ KD +
Sbjct: 172 FHDLSGKQVEVKRALPKDAN 191
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 62.9 bits (146), Expect = 3e-10
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 428 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQ 607
P R + + V GLPW T E + YF FG+++ +V D T SKGFGF+ F E E+
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESA 63
Query: 608 LRAL-GRRHMIDGRWCDVRI 664
RA H IDGR + ++
Sbjct: 64 TRACENPNHTIDGRTVNCKL 83
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ + GL TT +F +G++ + RD TG +GFGFI FA+ + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 629 HMIDGRWCDVR--IPNGKDGSSTAH---RKVFVGRCTENITAEDLREYF 760
H+I+G+ +++ IP G G+ + +K+FVG +T ++L+++F
Sbjct: 81 HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF 129
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ V G+P TE+ ++D+F+ +G+++ QV RD T S+GFGF+ F E L +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 629 HMID 640
+MID
Sbjct: 171 NMID 174
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ + GL TT +F +G++ + RD TG +GFGFI FA+ + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 629 HMIDGRWCDVR--IPNGKDGSSTAH---RKVFVGRCTENITAEDLREYF 760
H+I+G+ +++ IP G G+ + +K+FVG +T ++L+++F
Sbjct: 81 HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF 129
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ V G+P TE+ ++D+F+ +G+++ QV RD T S+GFGF+ F E L +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 629 HMID 640
+MID
Sbjct: 171 NMID 174
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
+ + + V GL W+T + +R YF FG+++ V D TG SKG+GF+ F E EA +RA
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 617 LGRRH-MIDGR 646
+ +IDGR
Sbjct: 80 CQNMNPVIDGR 90
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
R + + V L W+TT + +R YF FG ++ V +T G SKG+GFI F +Y + +RA
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRA 69
Query: 617 L-GRRHMIDGR 646
L + +IDGR
Sbjct: 70 LQNSKPIIDGR 80
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 701 KVFVGRCTENITAEDLREYF 760
K+FVG T TA+DLR YF
Sbjct: 13 KIFVGNLTWRTTADDLRRYF 32
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ V GL W+T + +R YF FG++L + D TG SKG+GF+ F E ++ RA+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 629 H-MIDGRWCDVRI 664
+ +IDGR + I
Sbjct: 79 NPVIDGRKANCNI 91
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ V GL W+T + +R YF FG++L + D TG SKG+GF+ F E ++ RA+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 629 H-MIDGRWCDVRI 664
+ +IDGR + I
Sbjct: 79 NPVIDGRKANCNI 91
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 625
+ V GL W+T E +R +F +GD+L V D TG SKG+GF+ F + EA RA +
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 626 RHMIDGR 646
+IDGR
Sbjct: 86 TPIIDGR 92
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Frame = +2
Query: 383 AYRYWCAFPRAESPPP-RPRC---SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDT 550
A R+ P+AES P RP+ ++L V GL +TT E +R F+ FG++ +V D
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
Query: 551 RTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 655
+G SKGFGF+++A E + + +DG++ D
Sbjct: 92 VSGYSKGFGFVRYATLEDSAKGIAG---MDGKFLD 123
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ V GL +TT +F +G++ + +D +TG +GFGF+ +A+ + +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 629 HMIDGRWCDVR--IPNGKDGSST-AHRKVFVGRCTENITAEDLREYF 760
H+I G+ +++ IP G S+ +K+FVG ++ ++ +E+F
Sbjct: 104 HIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFF 150
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +2
Query: 407 PRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIK 586
PR + + V G+P ++ +++F FG+L Q+ RD TG S+GFGF+
Sbjct: 118 PRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVT 177
Query: 587 FAEYEA--QLRALGRRHMIDGRWCDVRIPNGKDGSS 688
+ + L A G R + G +++ K +S
Sbjct: 178 YESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNS 213
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ V GL W+T + +R YF FG++L + D TG SKG+GF+ F + ++ RA+
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 629 H-MIDGRWCDVRIPN-GKDGSST 691
+ +IDGR + I + G+ ST
Sbjct: 79 NPVIDGRKANCNIASFGRPRPST 101
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/68 (39%), Positives = 43/68 (63%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S L + GL W E++++D FSSFG++ V++ D +G S+GFGF+ FAE + AL
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE---EGDALS 97
Query: 623 RRHMIDGR 646
+ +DG+
Sbjct: 98 AKDAMDGK 105
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-R 625
+ V GL W+T E +R +F +G++L V D TG SKG+GF+ F + EA RA
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 626 RHMIDGR 646
+IDGR
Sbjct: 86 TPIIDGR 92
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 625
+ V GL W+T + ++R+YF FGD++ V D +G SKG+GF+ F + EA +A +
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP 68
Query: 626 RHMIDGR 646
+IDGR
Sbjct: 69 APVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 625
+ V GL W+T + ++R+YF FGD++ V D +G SKG+GF+ F + EA +A +
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP 68
Query: 626 RHMIDGR 646
+IDGR
Sbjct: 69 APVIDGR 75
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 54.4 bits (125), Expect = 1e-07
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR- 625
L + GL TT E +R FSS+GDL V D TG SKG+GF+ F + L AL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEP 136
Query: 626 RHMIDGRWCDVRI-PNGKDGSST-----AHRKVFVGRCTENITAEDLREYF 760
IDGR ++ +G G+ + + RK++V ++ A+ L +F
Sbjct: 137 SKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHF 187
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ V +P+ + + ++F ++GD+ + D TG S+GF + E AL
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Query: 629 -HMIDGRWCDVRIP-NGKDG 682
+IDG+ + ++ +GK G
Sbjct: 229 VKVIDGKHLNCKLAVDGKKG 248
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 54.4 bits (125), Expect = 1e-07
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR- 625
L + GL TT E +R FSS+GDL V D TG SKG+GF+ F + L AL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEP 136
Query: 626 RHMIDGRWCDVRI-PNGKDGSST-----AHRKVFVGRCTENITAEDLREYF 760
IDGR ++ +G G+ + + RK++V ++ A+ L +F
Sbjct: 137 SKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHF 187
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
+ V +P+ + + ++F ++GD+ + D TG S+GF + E AL
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Query: 629 -HMIDGRWCDVRIP-NGKDG 682
+IDG+ + ++ +GK G
Sbjct: 229 VKVIDGKHLNCKLAVDGKKG 248
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA---EYEAQLRAL 619
L V +P TEE +R YF G++L V + +D RTG +G F+K+A + + +RAL
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 620 GRRHMIDGRW--CDVRIPNG-KDGSSTAHRKVFVGRCTENITAEDLREYF 760
+ + G VR +G ++ T K+FVG + T +++ E F
Sbjct: 182 HNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIF 231
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
L V L + TE+ V + F FG + V + RD S+G GF+K++ E + A+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQ-SRGCGFVKYSSKETAMAAI 268
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA---EYEAQLRAL 619
L V +P TEE +R YF G++L V + +D RTG +G F+K+A + + +RAL
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 620 GRRHMIDGRW--CDVRIPNG-KDGSSTAHRKVFVGRCTENITAEDLREYF 760
+ + G VR +G ++ T K+FVG + T +++ E F
Sbjct: 182 HNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIF 231
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
L V L + TE+ V + F FG + V + RD S+G GF+K++ E + A+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQ-SRGCGFVKYSSKETAMAAI 268
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 625
+ V GL W+T +E ++ +F FG++L V D +G SKG+GF+ F E EA A +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 626 RHMIDGR 646
+IDGR
Sbjct: 75 TPVIDGR 81
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 625
+ V GL W+T +E ++ +F FG++L V D +G SKG+GF+ F E EA A +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 626 RHMIDGR 646
+IDGR
Sbjct: 75 TPVIDGR 81
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 625
+ V GL W+T +E ++ +F FG++L V D +G SKG+GF+ F E EA A +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 626 RHMIDGR 646
+IDGR
Sbjct: 75 TPVIDGR 81
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +2
Query: 422 PPPRPRCSDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 598
PP + + +G LP ++ + + FSSFG+++M +V +D TGLSKG+GF+K+A+
Sbjct: 472 PPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 599 EAQLRALG--RRHMIDGRWCDVRI 664
+ A+ + +GR VRI
Sbjct: 532 QMANTAVQAMNGYRFEGRTLAVRI 555
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +2
Query: 422 PPPRPRCSDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 598
PP + + +G LP ++ + + FSSFG+++M +V +D TGLSKG+GF+K+A+
Sbjct: 472 PPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 599 EAQLRALG--RRHMIDGRWCDVRI 664
+ A+ + +GR VRI
Sbjct: 532 QMANTAVQAMNGYRFEGRTLAVRI 555
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 51.6 bits (118), Expect = 7e-07
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + GL W T + ++RD F+ FGD++ +V D TG S+GFGF+ F + A A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 629 --HMIDGRWCDVRIPNGKDGSSTAH 697
++GR V N + + A+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPRAY 121
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 51.6 bits (118), Expect = 7e-07
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + GL W T + ++RD F+ FGD++ +V D TG S+GFGF+ F + A A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 629 --HMIDGRWCDVRIPNGKDGSSTAH 697
++GR V N + + A+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPRAY 121
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
+ V GLPW T +E + ++F FG+++ V V D T S+G+GF+ F + E+ RA
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/74 (36%), Positives = 40/74 (54%)
Frame = +2
Query: 419 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 598
S P RC + GL W T++ +RD F +G L+ +V D +G S+GFGFI F E
Sbjct: 2 SEDPEYRC---FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEK 58
Query: 599 EAQLRALGRRHMID 640
+A A+ + +D
Sbjct: 59 KAMDEAIAAMNGMD 72
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +2
Query: 407 PRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIK 586
P + S P+ + L V GL ++TTE+ +RD F FG+L+ + + D KGF F++
Sbjct: 68 PPSSSSGPKTK---LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124
Query: 587 FAEYEAQLRALGRRH--MIDGR 646
+ E ++A+ H +DGR
Sbjct: 125 YETEEEAMKAIQGMHGKFLDGR 146
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
+ + + V GL W T +EA+ D+F +GD+L + D T SKG+GF+ F + +A RA
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.8 bits (111), Expect = 5e-06
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +2
Query: 422 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 601
PP L+VL + ++TT + + F+ +G ++ V + RD RTG S+GF F+++ +
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 602 AQLRALGR--RHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTE 727
+A+ R ++DGR ++ + K G + K+ GR E
Sbjct: 69 EAHKAVERLDGRVVDGR--EITVQFAKYGPNA--EKISKGRVVE 108
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.8 bits (111), Expect = 5e-06
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +2
Query: 422 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 601
PP L+VL + ++TT + + F+ +G ++ V + RD RTG S+GF F+++ +
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 602 AQLRALGR--RHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTE 727
+A+ R ++DGR ++ + K G + K+ GR E
Sbjct: 69 EAHKAVERLDGRVVDGR--EITVQFAKYGPNA--EKISKGRVVE 108
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 613
P S ++V LP+ T+E+ ++ FS+FG++ V++ +D SKG+ FI+F +
Sbjct: 37 PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96
Query: 614 ALGR--RHMIDGR--WCDVRIPNGKD 679
A+ R M +GR + D+ P +D
Sbjct: 97 AIETMDRRMYNGRMIYIDIAKPGKRD 122
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/107 (25%), Positives = 52/107 (48%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 613
P S++ + GLP EE +RD G++ V++ +D +G SKG+ F+ F + +
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 614 ALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLRE 754
A+ H + + +R S ++F+G +N T ++ R+
Sbjct: 173 AIEELHSKEFKGKTIRC-----SLSETKNRLFIGNIPKNWTEDEFRK 214
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--G 622
L V +P T+ E +++ F G++ ++ G + FGF+ +AE + L+A+
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDT 351
Query: 623 RRHMIDGRWCDV 658
R+ ++G+ +V
Sbjct: 352 ERYEVNGQPLEV 363
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +2
Query: 461 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--M 634
GL W T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+ +
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKE 71
Query: 635 IDGR 646
+DGR
Sbjct: 72 LDGR 75
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +2
Query: 461 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--M 634
GL W T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+ +
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKE 71
Query: 635 IDGR 646
+DGR
Sbjct: 72 LDGR 75
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +2
Query: 461 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--M 634
GL W T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+ +
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKE 71
Query: 635 IDGR 646
+DGR
Sbjct: 72 LDGR 75
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.0 bits (109), Expect = 9e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 592
S L V GL W T + +++ F+SFG++ V D TG S+GFGF+ F+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.0 bits (109), Expect = 9e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 592
S L V GL W T + +++ F+SFG++ V D TG S+GFGF+ F+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 48.0 bits (109), Expect = 9e-06
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 601
L V GL TT E ++D F+SFG L+ +V D +G SKGFGF+ +A E
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIE 86
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 48.0 bits (109), Expect = 9e-06
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+ V GLPW+TT E + F +G++ V D TG +KGFGF+ F + AL
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 48.0 bits (109), Expect = 9e-06
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+ V GLPW+TT E + F +G++ V D TG +KGFGF+ F + AL
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +2
Query: 461 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHM- 634
GL W T + A+ F+ +GD++ ++ D TG S+GFGF+ F + +A A+ G
Sbjct: 14 GLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQD 73
Query: 635 IDGRWCDVRIPNGK-DGSSTAHR 700
+DGR V + G HR
Sbjct: 74 LDGRSITVNEAQSRGSGGGGGHR 96
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +2
Query: 461 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHM- 634
GL W T + A+ F+ +GD++ ++ D TG S+GFGF+ F + +A A+ G
Sbjct: 14 GLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQD 73
Query: 635 IDGRWCDVRIPNGK-DGSSTAHR 700
+DGR V + G HR
Sbjct: 74 LDGRSITVNEAQSRGSGGGGGHR 96
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/57 (47%), Positives = 34/57 (59%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
L V L +E+ +R F SFG + +VQV RD TGL KGFGF++FA E AL
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL 342
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 473 KTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 589
+ TE V ++FS G + V++ D + S+G G+++F
Sbjct: 192 RATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEF 230
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/68 (33%), Positives = 40/68 (58%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S L + G+ + E+++R+ F+ +G+++ +V D TG S+GFGF+ F EA A+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI- 98
Query: 623 RRHMIDGR 646
+DGR
Sbjct: 99 --QALDGR 104
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 461 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
GL W T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 47.2 bits (107), Expect = 2e-05
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 419 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 598
SP P + V GL TE + YF+ FG + V V D RT +GFGFI +
Sbjct: 26 SPGPS-NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 84
Query: 599 EAQLRALGRR-HMIDGRWCDVRIPNGKD 679
EA + L + H ++G+ +V++ KD
Sbjct: 85 EAVDKVLQKTFHELNGKMVEVKLAVPKD 112
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 46.8 bits (106), Expect = 2e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Frame = +2
Query: 365 PAEGWPAYRYWCAFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 544
P EG PA + +PP + + + L + +P E + +FS FG + V+V R
Sbjct: 39 PLEGGPARK-----APVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVAR 93
Query: 545 DTRTGLSKGFGFIKFAEYEAQLRALG 622
+ +TG SK FGFI+F + E A G
Sbjct: 94 NKKTGKSKHFGFIQFEDPEVAEIAAG 119
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S + V GL + T+ + FS FGD+L Q+ + TG S+GFGFI FA+ A ++
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 623 RRH 631
H
Sbjct: 67 EMH 69
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 613
P C+ L V L TTE+ +R+ S +G + +++ R TG S+G+GF+++ + LR
Sbjct: 62 PYCT-LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLR 120
Query: 614 ALGRRH--MIDGR 646
A H +IDGR
Sbjct: 121 AYEDAHHSLIDGR 133
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 461 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--M 634
GL W T E+++ F+ FG++ ++ D TG SKGF F+ F + ++ A+ R +
Sbjct: 50 GLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQE 109
Query: 635 IDGR 646
+DGR
Sbjct: 110 LDGR 113
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 45.6 bits (103), Expect = 5e-05
Identities = 24/69 (34%), Positives = 41/69 (59%)
Frame = +2
Query: 413 AESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 592
+ESPP + + L + GL + T+E+ +R F FG+L+ V++ D + SKG+ F+++
Sbjct: 274 SESPPVKTK--KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT 331
Query: 593 EYEAQLRAL 619
EA AL
Sbjct: 332 TEEAAGTAL 340
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
++ V G W TT+E ++ F S+G++ V D TG KG+GF+ F + AL R
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 45.2 bits (102), Expect = 6e-05
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-R 625
L V G+P+++TE+ +R YF S G ++ V K G G FI F + RAL
Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFD 222
Query: 626 RHMIDGRWCDVR---------IPNGKDGSSTA------HRKVFVGRCTENITAEDLREYF 760
R + R+ ++ IP K S A + +V++G + T D+R+ F
Sbjct: 223 RAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLF 282
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
S L + GL + TTE+ + + FS G ++ Q+ D + SKGFGF+ FA + +AL
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 464 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
LPW T + +R++FS FG ++ +V D +TG ++ F F+ F E + AL
Sbjct: 219 LPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 270
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2
Query: 422 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 583
P +PR +L V +P + D F FG ++ V+V R+ +TG S+G G++
Sbjct: 101 PVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYV 154
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
+ L V L TT++++R FS FG + ++ RD+ T KGFGFI F + +AL
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL- 65
Query: 623 RRHMIDGRWCDVRI 664
+DG+ D R+
Sbjct: 66 --KSLDGKIVDGRL 77
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
++ V GL W TT E ++ F +G++ V D TG +KGFGF+ F + AL
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +2
Query: 407 PRAESPPPRPRCSDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 583
P+ P P + +G L W T E++ F GD++ +V D TG S+G+GF+
Sbjct: 164 PKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Query: 584 KF---AEYEAQLRALGRRHMIDGRWCDVRIPNGK 676
+ AE E L +L ++GR V + GK
Sbjct: 224 CYSSKAEMETALESLD-GFELEGRAIRVNLAQGK 256
Score = 31.9 bits (69), Expect = 0.60
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Frame = +2
Query: 425 PPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE- 601
PP + L LP+ + F + +V+V + TG S+GF F+ + E
Sbjct: 79 PPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVED 138
Query: 602 --------AQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREY 757
LGR ++ + D PN + K+FVG + +T+E L
Sbjct: 139 CNIIIDNLDGTEYLGRALKVN--FADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGA 196
Query: 758 F 760
F
Sbjct: 197 F 197
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Frame = +2
Query: 401 AFPRAESPPPRPRCSD----LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSK 568
A PR P +PR D + V LPW + FS G ++ +V D TG S+
Sbjct: 189 AAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSR 248
Query: 569 GFGFIKFA---EYEAQLRALGRRHMIDGRWCDVRI 664
GFGF++ + E + AL ++ ++GR V +
Sbjct: 249 GFGFVQMSNENEVNVAIAALDGQN-LEGRAIKVNV 282
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 425 PPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA 604
P P + L V LP+ +A+ F G + + +V + T S+GFGF+ + E
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 605 QLRAL 619
+A+
Sbjct: 167 AEKAV 171
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 601
P L V L + +E +R F +FG + +VQ+ D TG KGFGFI+F + E
Sbjct: 262 PADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLE 317
Score = 37.9 bits (84), Expect = 0.009
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Frame = +2
Query: 416 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 595
E+ P R + + + +P K TE V ++FS G + V++ D + SKG G+I+F +
Sbjct: 160 EADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Query: 596 YEAQLRA--------LGRRHMIDGRWCDVRIPNGKD----GSSTAHRKVFVGRCTENITA 739
+ A LG+ M+ + + G+ A RK++VG N++
Sbjct: 219 VMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSE 278
Query: 740 EDLREYF 760
LR+ F
Sbjct: 279 LQLRQIF 285
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR- 625
++V GL K+TEE + + +G L V+V R+ +G+S+GF FI F +A + R
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRI 359
Query: 626 RH---MIDGR 646
H ++DGR
Sbjct: 360 EHDGIVLDGR 369
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
L+V GL EE +R FS + +++ RD T +S+GF F+ F E +AL
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKAL 516
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
++ + L +A+ + FS+FG +L +V D +G SKG+GF+++ EA A+ +
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDK 192
Query: 626 RH--MIDGRWCDV-----RIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSXWSSDR 784
+ +++ + V ++ G V+V +E+++ E+L + FG +
Sbjct: 193 LNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTS 252
Query: 785 CV 790
CV
Sbjct: 253 CV 254
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
S+L V L T++ +R++F+ FG + +V RD +G+S+G GF+ F+ E RA+
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAI 384
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+ L V L T+ + + F+ G ++ V+V RD T S G+G++ +A + RAL
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+++ V L ++E + F FG + RD G SKGFGF+ F + RA+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAV 281
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
S + V G+ + T E +R+ FS +G+++ ++ D TG S+GF F+ F E A+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S + V GL T E +++ F SFG ++ V D +GLS+GFGF+ + E A+
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 623 --RRHMIDGR 646
+ +DGR
Sbjct: 96 AMQNKELDGR 105
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 473 KTTEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 649
+ T+ + D F + +G + +V D TG SKG+GF++FA+ Q+RA+ ++G++
Sbjct: 164 EVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE---MNGQY 220
Query: 650 CDVR 661
C R
Sbjct: 221 CSTR 224
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 41.9 bits (94), Expect = 6e-04
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S L++ LP +RD F FG L + + R+ TG +GFGF+K+ E A+
Sbjct: 47 SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106
Query: 623 R-RHMIDG 643
R H + G
Sbjct: 107 RMNHKVIG 114
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/107 (24%), Positives = 52/107 (48%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 613
P S++ + G+P TE ++ + S G++ V++ R+ +G KG+ F+ F +
Sbjct: 89 PHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAE 148
Query: 614 ALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLRE 754
A+ + D R RI K ++ A ++F+G N D+++
Sbjct: 149 AIDTLNNTDFR--GKRI---KCSTTQAKHRLFLGNVPRNWMESDIKK 190
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +2
Query: 455 VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
V L T E + + F FG + V V D +TG+S+GFGF+ F E RA+ +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 41.9 bits (94), Expect = 6e-04
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG- 622
++ V L +EE ++ F G++ V++ ++ +T SKG F++FA E RA+
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 623 -RRHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLRE 754
+ MI+G+ C V D +FVG + T E LRE
Sbjct: 275 LKSPMINGKKCGVTASQDND-------TLFVGNICKIWTPEALRE 312
Score = 35.1 bits (77), Expect = 0.065
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA 604
+ + GL EE VRD +G L V++ R+ + K FGF+ F +EA
Sbjct: 393 IFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA 444
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 41.9 bits (94), Expect = 6e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL- 619
S L V G+ + +TEE + FS +G +L V V D KGF ++ F+ E +AL
Sbjct: 21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL 80
Query: 620 -GRRHMIDGR 646
++DGR
Sbjct: 81 ELNAQLVDGR 90
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 592
+ + V GLP+ TEEAVR FS +G +L V++ D R+ K +GF+ F+
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFS 55
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 401 AFPRAESPPPRPRCSD----LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSK 568
A PR P PR + + V LPW + FS G ++ +V D TG S+
Sbjct: 226 AAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSR 285
Query: 569 GFGFIKFAEYE 601
GFGF+ ++ +
Sbjct: 286 GFGFVTMSDVD 296
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 410 RAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 589
RAE P P L V L + +A+ F G + + +V + T S+GFGF+
Sbjct: 140 RAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTM 198
Query: 590 AEYEAQLRALGR--RHMIDGR 646
+ + A+ + R+ ++GR
Sbjct: 199 SSVDEAETAVEKFNRYDLNGR 219
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 613
P ++L + +P + ++ + F SFG +L +V D TG+SK FGF+ Y++Q
Sbjct: 346 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFV---SYDSQAA 402
Query: 614 ALGRRHMIDGR 646
A M++GR
Sbjct: 403 AQNAIDMMNGR 413
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +2
Query: 461 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
G+P+ TE + FS +G+++ V + RD TG SKGF F+ + + + + A+
Sbjct: 42 GIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
L V LP+ TEE + ++FS+FG + V + D T S+G +I + E RA+
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +2
Query: 455 VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
V GL T E+ + D FS FG+++ ++ D TG S+ FGF+ F E ++ A+
Sbjct: 11 VRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.3 bits (90), Expect = 0.002
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 497 DYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWCDV--RI 664
D FS+FG +L +V RD +G+SKG+GF++F + A + +I + V +
Sbjct: 49 DMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFV 107
Query: 665 PNGKDGSSTAHRKVFVGRCTENITAEDLREYFG 763
G+ S V+V E T DL+ FG
Sbjct: 108 SRGQWDKSRVFTNVYVKNLVETATDADLKRLFG 140
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+L V L + + FS FG + +V + G+SKG GF++F+ E +A+
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAM 280
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +2
Query: 428 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQ 607
P PR +++ V LP + E+ +R F FG + V RD ++G S+ FGF+ F EA
Sbjct: 224 PTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAA 282
Query: 608 LRALGRRHMI 637
A+ + + I
Sbjct: 283 ASAVEKMNGI 292
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
++ + L +A+ + FSSFG +L +V D TG SKG+GF++F + E+ A+ +
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDK 195
Query: 626 RH--MIDGRWCDV-----RIPNGKDGSSTAHR--KVFVGRCTENITAEDLREYFG 763
+ +++ + V R +D ++ R V+V + I ++LR+ FG
Sbjct: 196 LNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFG 250
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/59 (30%), Positives = 36/59 (61%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
++L + L +E +++ FS +G++ +V + + G+S+GFGF+ ++ E LRAL
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRAL 389
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +2
Query: 476 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY-EAQLRALGR-RHMIDGRW 649
TT++ +R+ FS +G+++ V RD T S+GFGF+ ++ + EA+ G ++GR
Sbjct: 14 TTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRR 73
Query: 650 CDVRI 664
V++
Sbjct: 74 VSVKL 78
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 428 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA--EYE 601
P R S+L V L E +R+ F +G ++ +V G SKGFGF+ F+ E
Sbjct: 299 PNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEES 357
Query: 602 AQLRALGRRHMIDGRWCDVRIPNGKD 679
Q + ++DG+ VR+ K+
Sbjct: 358 KQAKRYLNGFLVDGKPIVVRVAERKE 383
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+++ V L T++ + FS +G + V V RD G S+GFGF+ F E +A+
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAM 259
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
++L V L T + F FG +L +V + G SKGFGF++F ++ + A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARS 169
Query: 623 RRH 631
H
Sbjct: 170 ALH 172
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S + V GL W TE + F +G + Q+ TG +GFGFI F + A+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 623 RRH 631
H
Sbjct: 72 HMH 74
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S + V GL W TE + F +G + Q+ TG +GFGFI F + A+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 623 RRH 631
H
Sbjct: 72 HMH 74
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
++ V L + T+ A+ D FS+F +V D +TG S+GFGF+ F + A+
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 626 RHMIDGRWCDVR 661
++G+W R
Sbjct: 209 ---MNGKWVSSR 217
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 595
+ V GLP+ TE VR+ SFG L + +D TG SKG+ F + +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 595
+ V GLP+ TE VR+ SFG L + +D TG SKG+ F + +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 595
+ V GLP+ TE VR+ SFG L + +D TG SKG+ F + +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
+L V L T+E +R+ F+ FG + +V RD +G SKG GF+ F+ R L
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNE 387
Query: 626 RH--MIDGRWCDVRIPNGKD 679
+ M+ G+ V + K+
Sbjct: 388 MNGKMVGGKPLYVALAQRKE 407
Score = 37.5 bits (83), Expect = 0.012
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Frame = +2
Query: 440 CSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
CS L V L + T+ + DYF+ ++ V+V RD T S G+G++ ++ + +A+
Sbjct: 46 CS-LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAM 104
Query: 620 GRRH--MIDGRWCDVRIPNGKDGSSTAHRKV---FVGRCTENITAEDLREYFGSXWSSDR 784
+ + ++G+ +RI SS V FV +++ + L E F +
Sbjct: 105 QKLNYSYLNGKM--IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVS 162
Query: 785 CVCA 796
C A
Sbjct: 163 CKVA 166
Score = 30.3 bits (65), Expect = 1.8
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Frame = +2
Query: 416 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 595
+S R +L V L + + + FS G ++ +V D G S+G+GF++F
Sbjct: 125 DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDT 183
Query: 596 YEAQLRALGRRH--MIDGRWCDVRIPNGKDGSSTAHRK-----VFVGRCTENITAEDLRE 754
++ A+ + + +++ + V K+ +A K V+V +E T ++L+
Sbjct: 184 EDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKT 243
Query: 755 YFGSXWSSDRCV 790
FG S V
Sbjct: 244 TFGQYGSISSAV 255
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 38.7 bits (86), Expect = 0.005
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Frame = +2
Query: 464 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MI 637
L + E + FS G+L+ V+V R+ TG +G+GFI+F + A R L + +
Sbjct: 31 LQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQM 90
Query: 638 DGRWCDVRI-----PNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSXWSSDR 784
G R+ +G+ + +FVG ++T L+E F +SS R
Sbjct: 91 PGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 395 WCAFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFS-SFGDLLMVQVKRDTRTGLSKG 571
W +F + P S + V L T+ +++ F + + +V D TG SKG
Sbjct: 101 WASFGSGQKVDAGPDHS-IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKG 159
Query: 572 FGFIKFAEYEAQLRALGRRHMIDGRWCDVR 661
+GF+KFAE + RA+ ++G +C R
Sbjct: 160 YGFVKFAEESERNRAMAE---MNGLYCSTR 186
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S+L V L ++E +++ FS FG + +V RD G SKG GF+ FA E A+
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
Query: 623 R 625
+
Sbjct: 191 Q 191
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +2
Query: 416 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 595
+S + + +++ V L TT++ +++ F +G + V +D G SKGFGF+ F
Sbjct: 20 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFEN 78
Query: 596 YEAQLRAL 619
+ RA+
Sbjct: 79 ADDAARAV 86
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 38.7 bits (86), Expect = 0.005
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI---KFAEYEAQLRAL 619
L V LP+ + F S G++ MV+V D TG S+GFGF+ +E EA +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 620 GRRHMIDGRWCDVRI----PNGKDGSSTAHRKVF 709
+ +DGR V P +DG S R F
Sbjct: 153 -NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSF 185
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 464 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 589
L W + A+ FS G ++ +V D +G SKGFGF+ +
Sbjct: 211 LSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
RC + V +P+ TEE +R+ G ++ ++ D TG KG+GF ++ + E L A
Sbjct: 9 RC--VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSA 66
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
L + GL T E +++D FSSF + +V + TG S+G+GF+ F ++ A+
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 479 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 655
T+ + + F + + + +V D TG SKG+GF++FA+ Q+RA+ ++G++C
Sbjct: 185 TDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE---MNGQYCS 241
Query: 656 VR 661
R
Sbjct: 242 SR 243
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 595
+ V GLP+ TE +R+ SFG L + +D TG SKG+ F + +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQD 425
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 38.3 bits (85), Expect = 0.007
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = +2
Query: 410 RAESPPPRPRC--------SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLS 565
R SP PR R + L+V L +E +R F FG + + + RD TG
Sbjct: 17 RGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDP 76
Query: 566 KGFGFIKFAEYEAQLRALGRRHMIDG 643
+GFGF++F + A +H +DG
Sbjct: 77 RGFGFVQFMD---PADAADAKHHMDG 99
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 437 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 616
+ S++ V + TEE +R +FS G + ++ D + G SKGFGF+ F+ E + A
Sbjct: 302 KVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDA 360
Query: 617 LGRRH--MIDGRWCDVRIPNGKD 679
+ H M G+ V I K+
Sbjct: 361 VKTFHGQMFHGKPLYVAIAQKKE 383
Score = 36.3 bits (80), Expect = 0.028
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
++ V LP T ++D F FG+++ +V G S+G+GF++F + +A A+
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAI 169
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLM-VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
++L + L E+ + D FS+FG + ++ RD TG S+GFGFI + +EA A+
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.9 bits (84), Expect = 0.009
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
++ + L +A+ + FSSFG +L +V D G SKG+GF++F + E A+ +
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDK 191
Query: 626 --------RHMIDGRWCDVR-IPNGKDGSSTAHRKVFVGRCTENITAEDLREYFG 763
+ + G + + + G+ + V+V + IT ++L++ FG
Sbjct: 192 LNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFG 246
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/59 (30%), Positives = 36/59 (61%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
S+L + L +E +++ FS +G++ +V +++ GLS+GFGF+ ++ E L A+
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAM 385
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +2
Query: 482 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 661
+ +R++FSS G++ V V D TG SKG +++F+E + + L M G + V
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELNGSDMGGGFYLVVD 477
Query: 662 IPNGKDGSS 688
P + SS
Sbjct: 478 EPRPRGDSS 486
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +2
Query: 407 PRAESPPP-RPRCSDLI----VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKG 571
P+A +PP +P +D I + L + E + F+ G+++ +V R+ +TG +G
Sbjct: 45 PQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 572 FGFIKFAEYEAQLRAL 619
+GFI+FA + A R L
Sbjct: 105 YGFIEFASHAAAERVL 120
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 506 SSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+S+ + +V D TG +KG+GF++F++ Q+RA+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +2
Query: 407 PRAESPPP-RPRCSDLI----VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKG 571
P+A +PP +P +D I + L + E + F+ G+++ +V R+ +TG +G
Sbjct: 45 PQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 572 FGFIKFAEYEAQLRAL 619
+GFI+FA + A R L
Sbjct: 105 YGFIEFASHAAAERVL 120
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 506 SSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+S+ + +V D TG +KG+GF++F++ Q+RA+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 613
P ++L + +P + ++ + F FG +L +V D TG+SK FGFI + A
Sbjct: 336 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 395
Query: 614 AL 619
A+
Sbjct: 396 AI 397
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 613
P ++L + +P + ++ + F FG +L +V D TG+SK FGFI + A
Sbjct: 327 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 386
Query: 614 AL 619
A+
Sbjct: 387 AI 388
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 37.5 bits (83), Expect = 0.012
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 449 LIVLGLPWK-TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQ 607
+IV LP K TEE +RD FS G++ V++KR + G S+ F +I F E EAQ
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKS-DGKSRQFAYIGFRTEQEAQ 57
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +2
Query: 464 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MI 637
L W T + ++D F +L +V + TG S+GFGFI F E AL + +
Sbjct: 226 LGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEV 285
Query: 638 DGRWCDVRIPNGKDGSSTAHRKVFVGRCTE 727
+GR + + + ++ + + V G E
Sbjct: 286 EGRALRLNLASEREKPTVSPPSVEEGETEE 315
Score = 37.1 bits (82), Expect = 0.016
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-- 622
L V LP+ T + F G ++ VQ+ D T S+GFGF+ E A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 623 RRHMIDGRWCDVRIPNGKDGSST----------------AHRKVFVGRCTENITAEDLRE 754
I GR V P G + KV+ G N+T++ L++
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 755 YFG 763
FG
Sbjct: 238 AFG 240
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.5 bits (83), Expect = 0.012
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Frame = +2
Query: 410 RAESPPPRPRC---------SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGL 562
R SP PR R + L+V L +E +R F FG + + + RD TG
Sbjct: 17 RGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGD 76
Query: 563 SKGFGFIKFAEYEAQLRALGRRHMIDG 643
+GFGFI+F + A +H +DG
Sbjct: 77 PRGFGFIQFMD---PADAAEAKHQMDG 100
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+ V GL W T +++ D F +G++ + D +G SKG+GFI F AL
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 497 DYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 631
++FS FG++ + D TG KGF + E+ +AL H
Sbjct: 245 EFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPH 289
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 589
LI+ LP++ ++ FS+ G + V + ++ TGL KGF F+KF
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L + LP+ T+E V+ F+ FG++ + + T +G F+KF +A + A+
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 629 HMIDG 643
G
Sbjct: 623 DTASG 627
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 455 VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
V GLP+ T + + FS G + + + + +GF F+KFA E RA+
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAI 78
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 36.7 bits (81), Expect = 0.021
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--- 619
++V G+ +T EE + + F FG++ + + D R+G KG+ I++ + E A+
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 620 -GRRHMIDGRWCDVRIPNGKDGSSTAHRK 703
G + D +G G + RK
Sbjct: 157 NGAELLTQNVSVDWAFSSGPSGGESYRRK 185
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 36.3 bits (80), Expect = 0.028
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = +2
Query: 428 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQ 607
PR + + L + L + +EE + FS FG ++ + +D R G S+GF FI+F ++
Sbjct: 13 PR-KFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSA 70
Query: 608 LRALGRRHMIDGR------WCDVRIPNGKDG 682
RA+ HM DGR C R P +DG
Sbjct: 71 GRAM--LHM-DGRLIGQKILCVQRTPKVEDG 98
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.9 bits (79), Expect = 0.037
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+ V GL W T E + + F +G++ + D +G SKG+GFI + AL
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +2
Query: 500 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR--WCDVRIPN 670
+FS FG++ + D TG KGF + E+ RAL H +G C I
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 671 GKDGSSTAH 697
K G H
Sbjct: 324 PKPGKQQQH 332
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.9 bits (79), Expect = 0.037
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+ V GL W T E + + F +G++ + D +G SKG+GFI + AL
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +2
Query: 500 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR--WCDVRIPN 670
+FS FG++ + D TG KGF + E+ RAL H +G C I
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 671 GKDGSSTAH 697
K G H
Sbjct: 324 PKPGKQQQH 332
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.9 bits (79), Expect = 0.037
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+ V GL W T E + + F +G++ + D +G SKG+GFI + AL
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +2
Query: 500 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR--WCDVRIPN 670
+FS FG++ + D TG KGF + E+ RAL H +G C I
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 671 GKDGSSTAH 697
K G H
Sbjct: 324 PKPGKQQQH 332
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +2
Query: 464 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDG 643
LP + A+ YFSSFG++ V V TG S G+ +I E + LG RH + G
Sbjct: 245 LPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELG-RHDVGG 303
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 35.5 bits (78), Expect = 0.049
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S L V G +E ++ FS FG + V++ + RT S G+G++ F E A+
Sbjct: 77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 623 RRH--MIDGRWCDVRIPNGKDGSSTAHR 700
+ DGR+ V+ G+ G S R
Sbjct: 137 AMNGKFFDGRFILVKF--GQPGLSRRRR 162
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.5 bits (78), Expect = 0.049
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 455 VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
V L T + + F FG + V D +T +S+GFGF+ F E RA+ +
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 234
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 35.5 bits (78), Expect = 0.049
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 613
P S L V L + T + FS+FG + V V +D T S+G F+ + E +
Sbjct: 54 PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAK 113
Query: 614 A 616
A
Sbjct: 114 A 114
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 34.7 bits (76), Expect = 0.086
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 622
S + V GL TEE + FS FG+++ V++ + KG GF++FA ++ A+G
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIG 380
Score = 31.9 bits (69), Expect(2) = 0.058
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 545 DTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 661
D+ TG SKG+GF++F + + RA+ ++G +C R
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTE---MNGAFCSSR 283
Score = 22.2 bits (45), Expect(2) = 0.058
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 677 DGSSTAHRKVFVGRCTENITAEDLREYF 760
DG S + +FVG ++T EDL + F
Sbjct: 321 DGESN-NSTIFVGGLDADVTEEDLMQPF 347
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.1 bits (77), Expect = 0.065
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
++ V L + T+ + FS F +V D +TG S+GFGF+ F + A+
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 626 RHMIDGRWCDVR 661
++G+W R
Sbjct: 205 ---MNGKWLSSR 213
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 35.1 bits (77), Expect = 0.065
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 473 KTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEAQLRALGRRHM 634
+ ++ + F+ F M +V RD RTG +KG+GF+ F A+ A L+ + +++
Sbjct: 147 EVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYV 203
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.7 bits (76), Expect = 0.086
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Frame = +2
Query: 461 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQ--LRALGRRH 631
GL TT++++R F+ F L+ +D +T KGFGFI F +E +AQ L+AL +
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITFESEDDAQKALKALNGK- 130
Query: 632 MIDGR 646
+++GR
Sbjct: 131 IVNGR 135
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 34.7 bits (76), Expect = 0.086
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L V L W + A+ + F+ G ++ +V D +G SKGFGF+ + + +A+
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 629 H--MIDGR 646
+ +DGR
Sbjct: 311 NGADLDGR 318
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEA 604
L V L + + F S G++ MV+V D TG S+GFGF+ AE EA
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 34.7 bits (76), Expect = 0.086
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L V L W + A+ + F+ G ++ +V D +G SKGFGF+ + + +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 629 H--MIDGR 646
+ +DGR
Sbjct: 319 NGADLDGR 326
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEA 604
L V L + + F S G++ MV+V D TG S+GFGF+ AE EA
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 34.7 bits (76), Expect = 0.086
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 583
+ L V GL + TE + D+F+ G + V + D T S+GFGFI
Sbjct: 45 NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 91
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.7 bits (76), Expect = 0.086
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 583
+ L V GL + TE + D+F+ G + V + D T S+GFGFI
Sbjct: 75 NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 121
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 434 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 589
P ++L + +P + ++ + F SFG +L +V D TG+SK FG + F
Sbjct: 345 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L V L ++++E ++ F S+G + V + D T KG+ FI++ + ++A ++
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYM-HTRDMKAAYKQ 198
Query: 629 ---HMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENI 733
IDGR V + G+ + R++ G T +
Sbjct: 199 ADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRV 236
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 479 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 655
T+ + + FS + + +V D+ TG SKG+GF++F + + RAL ++G +C
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE---MNGAYCS 270
Query: 656 VR 661
R
Sbjct: 271 NR 272
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 33.9 bits (74), Expect = 0.15
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLM----VQVKRDTRTGLSKGFGFIKFAEYEAQLR 613
++ V L + T+ A+ D FS+F +V D +TG S+GFGF+ F +
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 614 ALGRRHMIDGRWCDVR 661
A+ ++G+W R
Sbjct: 209 AINE---MNGKWVSSR 221
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +2
Query: 410 RAESPPPRPRCSDLIVL---GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGF 580
+ S P + + +VL L E +++ F +FG+++ V++ D L +G G+
Sbjct: 84 KGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGY 143
Query: 581 IKFAEYEAQLRALGRRHMIDGRWCDVRI 664
+ E++A+ A + +DG D ++
Sbjct: 144 V---EFKARADAEKAQLYMDGAQIDGKV 168
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +2
Query: 410 RAESPPPRPRCSDLIVL---GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGF 580
+ S P + + +VL L E +++ F +FG+++ V++ D L +G G+
Sbjct: 84 KGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGY 143
Query: 581 IKFAEYEAQLRALGRRHMIDGRWCDVRI 664
+ E++A+ A + +DG D ++
Sbjct: 144 V---EFKARADAEKAQLYMDGAQIDGKV 168
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 628
L V LP++T + D+F G+++ VQ+ + + G G GF++FA AL ++
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEALQKK 187
Query: 629 H 631
+
Sbjct: 188 N 188
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 601
S L V G +E ++ FS FG + V++ + RT S G+G++ F E
Sbjct: 58 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 110
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 482 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 583
++ +R +FS G++ V V D TG S+GF +I
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
>At4g21930.1 68417.m03172 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 183
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 321 GDYAAYASSTSACHHRRRAGRPTDIGVPSHARNRRRLDHDAPI 449
G + A + S RR+ GR +D+ VPS + +R + AP+
Sbjct: 55 GAWNARSLEASGSEWRRKGGRVSDLTVPSDGQRKRHVATSAPV 97
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 419 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSS--FGDLLMVQVKRDTRTGLSKGFGFIKFA 592
SP P L V L WK +R+ F++ F + V D G S G+GF+ FA
Sbjct: 186 SPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFA 244
Query: 593 EYEAQLRAL 619
E A+
Sbjct: 245 TREEAENAI 253
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +2
Query: 446 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 625
++ V L + T+ + FS + +V D +TG S+GFGF+ F + A+
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 626 RHMIDGRWCDVR 661
I G+W R
Sbjct: 200 ---ITGKWLGSR 208
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 413 AESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 592
AES P+ + S + V LP T E + + F SFG + ++ + GF+ F
Sbjct: 265 AESIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFE 324
Query: 593 EYEA 604
EA
Sbjct: 325 NGEA 328
>At3g32930.1 68416.m04173 expressed protein
Length = 249
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +2
Query: 95 ELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSLLLSTV 274
+LG ++ L+ ++ +K D++ +R VSK + P ++G +P++ +G+ LL +
Sbjct: 112 DLGFSKWLQNIKGNKPDKDAADKRKLVSK---WHPTTKGTLRRNYRIPSKAEGNRLLKAI 168
Query: 275 AA 280
A+
Sbjct: 169 AS 170
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 518 DLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+++ V+V R+ GLS+G+GF++F ++ + L
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 479 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
++ + + FS + + +V D TG SKG+GF++F + + +A+
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 518 DLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+++ V+V R+ GLS+G+GF++F ++ + L
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 479 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
++ + + FS + + +V D TG SKG+GF++F + + +A+
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 589
+ V GL T+E ++ F+ FG+++ V++ + KG GF++F
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP------VGKGCGFVQF 346
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 533 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+V D TG SKG+GF++F + + +A+
Sbjct: 230 KVVLDANTGRSKGYGFVRFGDENERTKAM 258
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 589
+ V GL T+E ++ FS FG+++ V++ + KG GF++F
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP------VGKGCGFVQF 348
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 601
L V GL + E + F FGD+ V+ D + FGF+ F E E
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLERE 65
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +2
Query: 443 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 619
+ + V LP+ + + F FG + ++ + GL +GF++F E +A RA+
Sbjct: 319 TSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAI 377
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-- 622
L V GL + T++ + +F+ G + + + RT +S+GF F+ + + R +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 623 RRHMIDGR 646
+ +++GR
Sbjct: 134 NQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 449 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-- 622
L V GL + T++ + +F+ G + + + RT +S+GF F+ + + R +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 623 RRHMIDGR 646
+ +++GR
Sbjct: 133 NQSVLEGR 140
>At1g68150.1 68414.m07785 WRKY family transcription factor similar
to DNA-binding protein ABF2 GI:1159879 from [Avena
fatua]
Length = 374
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 98 LGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSLL 262
+G++ SLK + +++ +E+EG + S + + G++DE + E+D S L
Sbjct: 27 MGIDLSLK-LEAEEKKKEIEGSKHSRENKEDEEHDASGDEDEQMVKEDEDDSSSL 80
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 482 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF--AEYEAQLRALGRRHMI 637
EE V DYFS+FG + V++ + + FGF+ F E + A G H +
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQQK----RMFGFVTFMYPETVKSILAKGNPHFV 218
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 330 AAYASSTSACHHRRRAGRPTDIGVPSHARNRRRLDHDA 443
A+ +S S H+R RP VP ARN R+ H +
Sbjct: 488 ASSSSVQSRSHNRVSQPRPLASAVPQAARNANRIPHSS 525
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 482 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA--EYEAQLRALGRRHMIDGRWCD 655
EE V +YFS+FG + V++ + + FGF+ F E + A G H + CD
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQQK----RMFGFVTFVYPETVKSILAKGNPHFV----CD 323
Query: 656 VRI 664
R+
Sbjct: 324 SRV 326
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 146 EEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGS 256
+E +G+ +SVS+ E EG +DEP++ + GS
Sbjct: 4540 DEFDGKEYSVSEDEEEDKEDEGSEDEPLDNGIGDVGS 4576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,953,032
Number of Sequences: 28952
Number of extensions: 371816
Number of successful extensions: 1413
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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