Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G05
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    40   4e-04
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   4.9  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   8.6  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   8.6  

>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 233 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSR---SKTAETCEEELIDYVHVLDKCV 403
           + DP + + +EC   PD + +   ++EC  RV  +      +E C EE     H    C 
Sbjct: 146 ITDPLEKMTQECMDAPDCKEVKHHFEECTARVTKKVEQGDKSEDCIEEFFHLYHCARDCA 205

Query: 404 TKDLFKRL 427
              +FK L
Sbjct: 206 DPKVFKVL 213


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 421 LKQVLGDAFVKNMDIVNEFFFTGFCSFRS 335
           +KQ L D+F  N +  N FF + + SF S
Sbjct: 468 IKQALNDSFDGNEEKKNAFFLSSYKSFAS 496


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 460 EINV*IFNSLL*PLKQVLGDAFVKNMDI 377
           EIN+ +F   L P++QVL D+ +K  +I
Sbjct: 334 EINMDLFKKTLKPVEQVLKDSNLKKSEI 361


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 152  YSLILFFSKRYLIYTACSLFLYFLSKIRLLPITMTPNLKEFPIV 21
            YSLI    K YLI+    L+ ++L  +         N+ ++PI+
Sbjct: 1083 YSLIYGAEKPYLIHNVVGLYFFWLLFLYAKNGFFVQNISKWPII 1126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,370
Number of Sequences: 5004
Number of extensions: 36864
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)